Evidence map›Paper›PMID 26578794›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth.

Evelina Y Basenko, Takahiko Sasaki, Lexiang Ji, Cameron J Prybol, Rachel M Burckhardt, Robert J Schmitz, Zachary A Lewis

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 121 citations in OpenAlex.

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  6. HISTONE DEACETYLASE-1 is required for epigenome stability inProceedings of the National Academy of Sciences of the United States of America · 2025
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  13. Remodeling of perturbed chromatin can initiate de novo transcriptional and post-transcriptional silencing.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  17. Histone deacetylation and cytosine methylation compartmentalize heterochromatic regions in the genome organization ofProceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Evelina Y BasenkoDepartment of Microbiology, University of Georgia, Athens, GA 30602;
Takahiko SasakiDepartment of Microbiology, University of Georgia, Athens, GA 30602;
Lexiang JiInstitute of Bioinformatics, University of Georgia, Athens, GA 30602;
Cameron J PrybolDepartment of Microbiology, University of Georgia, Athens, GA 30602;
Rachel M BurckhardtDepartment of Microbiology, University of Georgia, Athens, GA 30602;
Robert J SchmitzDepartment of Genetics, University of Georgia, Athens, GA 30602.
Zachary A LewisDepartment of Microbiology, University of Georgia, Athens, GA 30602; zlewis@uga.edu.ORCID http://orcid.org/0000-0002-1735-8266
University of Georgia · US

Funding

Tools for Functional Analysis and Cell BiologyP01GM068087 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 2004 to 2013
$19.3M
Identification and Characterization of Population-Wide Epigenetic VariationR00GM100000 · NIGMS · UNIVERSITY OF GEORGIA · PI SCHMITZ, ROBERT J. · 2013 to 2015
$723k
NIGMS NIH HHS P01 GM068087NIGMS NIH HHS P01GM68087NIGMS NIH HHS R00 GM100000NIGMS NIH HHS R00GM100000
6 · The paper itself

Abstract

H3K9 methylation directs heterochromatin formation by recruiting multiple heterochromatin protein 1 (HP1)-containing complexes that deacetylate histones and methylate cytosine bases in DNA. In Neurospora crassa, a single H3K9 methyltransferase complex, called the DIM-5,-7,-9, CUL4, DDB1 Complex (DCDC), is required for normal growth and development. DCDC-deficient mutants are hypersensitive to the genotoxic agent methyl methanesulfonate (MMS), but the molecular basis of genotoxic stress is unclear. We found that both the MMS sensitivity and growth phenotypes of DCDC-deficient strains are suppressed by mutation of embryonic ectoderm development or Su-(var)3-9; E(z); Trithorax (set)-7, encoding components of the H3K27 methyltransferase Polycomb repressive complex-2 (PRC2). Trimethylated histone H3K27 (H3K27me3) undergoes genome-wide redistribution to constitutive heterochromatin in DCDC- or HP1-deficient mutants, and introduction of an H3K27 missense mutation is sufficient to rescue phenotypes of DCDC-deficient strains. Accumulation of H3K27me3 in heterochromatin does not compensate for silencing; rather, strains deficient for both DCDC and PRC2 exhibit synthetic sensitivity to the topoisomerase I inhibitor Camptothecin and accumulate γH2A at heterochromatin. Together, these data suggest that PRC2 modulates the response to genotoxic stress.

Indexed as

DNA DamageGenome, FungalFungal ProteinsHeterochromatinHistonesMethylationMultienzyme ComplexesNeurospora crassaProtein MethyltransferasesFungal ProteinsHeterochromatinHistonesMultienzyme ComplexesProtein Methyltransferasesgenotoxic stressH3K27me3H3K9me3heterochromatinPolycomb

Identifiers

PMID26578794
PMCPMC4655558
OpenAlexW1938646891

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.