Evidence map›Paper›PMID 26578770›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

High-resolution structures of the M2 channel from influenza A virus reveal dynamic pathways for proton stabilization and transduction.

Jessica L Thomaston, Mercedes Alfonso-Prieto, Rahel A Woldeyes, James S Fraser, Michael L Klein, Giacomo Fiorin, William F DeGrado

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 109 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Solid-State NMR of Virus Membrane Proteins.Accounts of chemical research · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Activation of the influenza B M2 proton channel (BM2).bioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Water Networks Repopulate Protein-Ligand Interfaces with Temperature.Angewandte Chemie (International ed. in English) · 2022
    Article
  19. Article
  20. Spiers Memorial Lecture: Analysis andFaraday discussions · 2021
    Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jessica L ThomastonDepartment of Pharmaceutical Chemistry, University of San Francisco, San Francisco, CA 94158;
Mercedes Alfonso-PrietoInstitute of Computational Molecular Science, Temple University, Philadelphia, PA 19122;
Rahel A WoldeyesDepartment of Pharmaceutical Chemistry, University of San Francisco, San Francisco, CA 94158;ORCID http://orcid.org/0000-0003-0737-8383
James S FraserDepartment of Bioengineering and Therapeutic Science, University of California, San Francisco, San Francisco, CA 94158.
Michael L KleinInstitute of Computational Molecular Science, Temple University, Philadelphia, PA 19122;
Giacomo FiorinInstitute of Computational Molecular Science, Temple University, Philadelphia, PA 19122; william.degrado@ucsf.edu giacomo.fiorin@temple.edu.
William F DeGradoDepartment of Pharmaceutical Chemistry, University of San Francisco, San Francisco, CA 94158; william.degrado@ucsf.edu giacomo.fiorin@temple.edu.
University of California, San Francisco · USTemple University · US

Funding

RESEARCH TRAINING IN CHEMISTRY AND CHEMICAL BIOLOGYT32GM064337 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIK, CHARLES SCOTT · 2002 to 2021
$7.8M
Structure of M2 Proton Channel from Influenza A VirusR01GM056423 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 1997 to 2016
$4.5M
The Impact of Mutation on the Conformations and Recognition of UbiquitinDP5OD009180 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRASER, JAMES SOLOMON · 2011 to 2015
$1.8M
Model Comparison in Structural BiologyR21GM110580 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRASER, JAMES SOLOMON · 2014 to 2015
$419k
Anachem Lipidic Cubic Phase Crystallization RobotS10RR027234 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2010 to 2010
$175k
NCRR NIH HHS 1S10RR027234-01NCRR NIH HHS S10 RR027234NIGMS NIH HHS GM110580NIGMS NIH HHS R01 GM056423NIGMS NIH HHS R01-GM056423NIGMS NIH HHS R21 GM110580NIGMS NIH HHS T32 GM064337NIH HHS DP5 OD009180NIH HHS OD009180
6 · The paper itself

Abstract

The matrix 2 (M2) protein from influenza A virus is a proton channel that uses His37 as a selectivity filter. Here we report high-resolution (1.10 Å) cryogenic crystallographic structures of the transmembrane domain of M2 at low and high pH. These structures reveal that waters within the pore form hydrogen-bonded networks or "water wires" spanning 17 Å from the channel entrance to His37. Pore-lining carbonyl groups are well situated to stabilize hydronium via second-shell interactions involving bridging water molecules. In addition, room temperature crystallographic structures indicate that water becomes increasingly fluid with increasing temperature and decreasing pH, despite the higher electrostatic field. Complementary molecular dynamics simulations reveal a collective switch of hydrogen bond orientations that can contribute to the directionality of proton flux as His37 is dynamically protonated and deprotonated in the conduction cycle.

Indexed as

Molecular Dynamics SimulationProtonsCrystallography, X-RayHistidineInfluenza A virusViral Matrix ProteinsViroporin ProteinsHistidineM2 protein, Influenza A virusProtonsViral Matrix ProteinsViroporin Proteinsinfluenza M2 channelmembrane proteinsproton channels

Identifiers

PMID26578770
PMCPMC4655559
OpenAlexW2219910005

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.