Evidence map›Paper›PMID 26578708›Full record

ArticlePlant physiology2016

RNA Recognition Motif-Containing Protein ORRM4 Broadly Affects Mitochondrial RNA Editing and Impacts Plant Development and Flowering.

Xiaowen Shi, Arnaud Germain, Maureen R Hanson, Stéphane Bentolila

Abstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  13. Comparative analysis of mitochondrial genomes ofFrontiers in plant science · 2023
    Article
  14. Article
  15. Targeted base editing in the mitochondrial genome ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xiaowen ShiDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853 (X.S., A.G., M.R.H., S.B.).ORCID http://orcid.org/0000-0003-0281-2953
Arnaud GermainDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853 (X.S., A.G., M.R.H., S.B.).
Maureen R HansonDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853 (X.S., A.G., M.R.H., S.B.) mrh5@cornell.edu.ORCID http://orcid.org/0000-0001-8141-3058
Stéphane BentolilaDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853 (X.S., A.G., M.R.H., S.B.).ORCID http://orcid.org/0000-0003-2805-7298

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant RNA editosomes modify cytidines (C) to uridines (U) at specific sites in plastid and mitochondrial transcripts. Members of the RNA-editing factor interacting protein (RIP) family and Organelle RNA Recognition Motif-containing (ORRM) family are essential components of the Arabidopsis (Arabidopsis thaliana) editosome. ORRM2 and ORRM3 have been recently identified as minor mitochondrial editing factors whose silencing reduces editing efficiency at ∼6% of the mitochondrial C targets. Here we report the identification of ORRM4 (for organelle RRM protein 4) as a novel, major mitochondrial editing factor that controls ∼44% of the mitochondrial editing sites. C-to-U conversion is reduced, but not eliminated completely, at the affected sites. The orrm4 mutant exhibits slower growth and delayed flowering time. ORRM4 affects editing in a site-specific way, though orrm4 mutation affects editing of the entire transcript of certain genes. ORRM4 contains an RRM domain at the N terminus and a Gly-rich domain at the C terminus. The RRM domain provides the editing activity of ORRM4, whereas the Gly-rich domain is required for its interaction with ORRM3 and with itself. The presence of ORRM4 in the editosome is further supported by its interaction with RIP1 in a bimolecular fluorescence complementation assay. The identification of ORRM4 as a major mitochondrial editing factor further expands our knowledge of the composition of the RNA editosome and reveals that adequate mitochondrial editing is necessary for normal plant development.

Indexed as

RNA EditingArabidopsisArabidopsis ProteinsCarrier ProteinsFlowersGene Expression Regulation, PlantGene SilencingMitochondriaMutationNucleotide MotifsPlants, Genetically ModifiedProtein Structure, TertiaryRNARNA-Binding ProteinsRNA, MitochondrialArabidopsis ProteinsCarrier ProteinsORRM4 protein, ArabidopsisRIP1 protein, ArabidopsisRNARNA-Binding ProteinsRNA, Mitochondrial

Identifiers

PMID26578708
PMCPMC4704580

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.