Evidence map›Paper›PMID 26578584›Full record

ArticleNucleic acids research2016

InsectBase: a resource for insect genomes and transcriptomes.

Chuanlin Yin, Gengyu Shen, Dianhao Guo, Shuping Wang, Xingzhou Ma, Huamei Xiao, Jinding Liu, Zan Zhang, Ying Liu, Yiqun Zhang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 177 citations in OpenAlex.

  1. Review
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  11. Molecular advances to study the function, evolution and spectral tuning of arthropod visual opsins.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  12. Article
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  14. Article
  15. Article
  16. Double-Strand RNA (dsRNA) Delivery Methods in Insects: Diaphorina citri.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  17. Application progress of plant-mediated RNAi in pest control.Frontiers in bioengineering and biotechnology · 2022
    Review
  18. Article
  19. Article
  20. Review

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Chuanlin YinMinistry of Agriculture, Key Lab of Agricultural Entomology and Institute of Insect Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China Department of Entomology, Nanjing Agricultural University, Nanjing 210095, China.
Gengyu ShenLibrary of Nanjing Agricultural University, Nanjing 210095, China.
Dianhao GuoMinistry of Agriculture, Key Lab of Agricultural Entomology and Institute of Insect Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China Department of Entomology, Nanjing Agricultural University, Nanjing 210095, China.
Shuping WangTechnical Center for Animal Plant and Food Inspection and Quarantine, Shanghai Entry-Exit Inspection and Quarantine Bureau, Shanghai 200135, China.
Xingzhou MaDepartment of Entomology, Nanjing Agricultural University, Nanjing 210095, China.
Huamei XiaoDepartment of Entomology, Nanjing Agricultural University, Nanjing 210095, China Department of City Construction, Shaoyang University, Shaoyang 422000, China.
Jinding LiuCollege of Information Science and Technology, Nanjing Agricultural University, Nanjing, 210095 Jiangsu, China.
Zan ZhangDepartment of Entomology, Nanjing Agricultural University, Nanjing 210095, China Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei, China.
Ying LiuDepartment of Entomology, Nanjing Agricultural University, Nanjing 210095, China Department of Entomology, China Agricultural University, Beijing 100193, China.
Yiqun ZhangCollege of Information Science and Technology, Nanjing Agricultural University, Nanjing, 210095 Jiangsu, China.
Kaixiang YuDepartment of Entomology, Nanjing Agricultural University, Nanjing 210095, China.
Shuiqing HuangCollege of Information Science and Technology, Nanjing Agricultural University, Nanjing, 210095 Jiangsu, China.
Fei LiMinistry of Agriculture, Key Lab of Agricultural Entomology and Institute of Insect Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China lifei18@zju.edu.cn.
Nanjing Agricultural University · CNShanghai Entry-Exit Inspection and Quarantine Bureau · CNZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genomes and transcriptomes of hundreds of insects have been sequenced. However, insect community lacks an integrated, up-to-date collection of insect gene data. Here, we introduce the first release of InsectBase, available online at http://www.insect-genome.com. The database encompasses 138 insect genomes, 116 insect transcriptomes, 61 insect gene sets, 36 gene families of 60 insects, 7544 miRNAs of 69 insects, 96,925 piRNAs of Drosophila melanogaster and Chilo suppressalis, 2439 lncRNA of Nilaparvata lugens, 22,536 pathways of 78 insects, 678,881 untranslated regions (UTR) of 84 insects and 160,905 coding sequences (CDS) of 70 insects. This release contains over 12 million sequences and provides search functionality, a BLAST server, GBrowse, insect pathway construction, a Facebook-like network for the insect community (iFacebook), and phylogenetic analysis of selected genes.

Indexed as

Databases, GeneticGene Expression ProfilingGenome, InsectAnimalsGenes, InsectGenomicsInsectaPhylogenySoftware

Identifiers

PMID26578584
PMCPMC4702856
OpenAlexW2284863332

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.