Evidence map›Paper›PMID 26578511›Full record

ArticleThe Journal of biological chemistry2016

Characterization of a Cyanobacterial Chloride-pumping Rhodopsin and Its Conversion into a Proton Pump.

Takatoshi Hasemi, Takashi Kikukawa, Naoki Kamo, Makoto Demura

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 79 citations in OpenAlex.

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  9. Review
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  11. Mutations conferring SOScientific reports · 2022
    Article
  12. Article
  13. Article
  14. Microbial Rhodopsins.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  15. Review
  16. Article
  17. Article
  18. Early-stage dynamics of chloride ion-pumping rhodopsin revealed by a femtosecond X-ray laser.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Takatoshi HasemiFrom the Faculty of Advanced Life Science, Hokkaido University, Sapporo 060-0810, Japan.
Takashi KikukawaFrom the Faculty of Advanced Life Science, Hokkaido University, Sapporo 060-0810, Japan kikukawa@sci.hokudai.ac.jp.
Naoki KamoFrom the Faculty of Advanced Life Science, Hokkaido University, Sapporo 060-0810, Japan.
Makoto DemuraFrom the Faculty of Advanced Life Science, Hokkaido University, Sapporo 060-0810, Japan.
Hokkaido University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Light-driven ion-pumping rhodopsins are widely distributed in microorganisms and are now classified into the categories of outward H(+) and Na(+) pumps and an inward Cl(-) pump. These different types share a common protein architecture and utilize the photoisomerization of the same chromophore, retinal, to evoke photoreactions. Despite these similarities, successful pump-to-pump conversion had been confined to only the H(+) pump bacteriorhodopsin, which was converted to a Cl(-) pump in 1995 by a single amino acid replacement. In this study we report the first success of the reverse conversion from a Cl(-) pump to a H(+) pump. A novel microbial rhodopsin (MrHR) from the cyanobacterium Mastigocladopsis repens functions as a Cl(-) pump and belongs to a cluster that is far distant from the known Cl(-) pumps. With a single amino acid replacement, MrHR is converted to a H(+) pump in which dissociable residues function almost completely in the H(+) relay reactions. MrHR most likely evolved from a H(+) pump, but it has not yet been highly optimized into a mature Cl(-) pump.

Indexed as

Adaptation, PhysiologicalBacteriorhodopsinsChloridesCyanobacteriaEscherichia coliHydrogen-Ion ConcentrationIsomerismKineticsLightMutant ProteinsPhylogenyProton PumpsRetinaldehydeSpectrum AnalysisBacteriorhodopsinsChloridesMutant ProteinsProton PumpsRetinaldehydebioenergeticsmembrane proteinmicrobial rhodopsinphotobiologyphotoreceptorproton pumpretinal proteins

Identifiers

PMID26578511
PMCPMC4697170
OpenAlexW2218208517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.