Evidence map›Paper›PMID 26578169›Full record

ArticleNature communications2015

Transcriptional regulation of PIN genes by FOUR LIPS and MYB88 during Arabidopsis root gravitropism.

Hong-Zhe Wang, Ke-Zhen Yang, Jun-Jie Zou, Ling-Ling Zhu, Zi Dian Xie, Miyo Terao Morita, Masao Tasaka, Jiří Friml, Erich Grotewold, Tom Beeckman and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
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  4. Review
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  9. Article
  10. Genome Identification and Expression Profiling of theInternational journal of molecular sciences · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Leveraging orthology within maize and Arabidopsis QTL to identify genes affecting natural variation in gravitropism.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Plants in Microgravity: Molecular and Technological Perspectives.International journal of molecular sciences · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. MYB Transcription Factors Becoming Mainstream in Plant Roots.International journal of molecular sciences · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 6 countries.

Hong-Zhe WangKey Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan (Fragrant Hill), Haidian, Beijing 100093, China.
Ke-Zhen YangKey Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan (Fragrant Hill), Haidian, Beijing 100093, China.
Jun-Jie ZouKey Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan (Fragrant Hill), Haidian, Beijing 100093, China.
Ling-Ling ZhuKey Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan (Fragrant Hill), Haidian, Beijing 100093, China.
Zi Dian XieDepartment of Molecular Genetics, Center for Applied Plant Sciences, The Ohio State University, Columbus, Ohio 43210, USA.
Miyo Terao MoritaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Masao TasakaGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630-0101, Japan.
Jiří FrimlInstitute of Science and Technology of Austria, Am Campus 1, Klosterneuburg 3400, Austria.
Erich GrotewoldDepartment of Molecular Genetics, Center for Applied Plant Sciences, The Ohio State University, Columbus, Ohio 43210, USA.
Tom BeeckmanDepartment of Plant Systems Biology, VIB, Ghent B-9052, Belgium.
Steffen VannesteDepartment of Plant Systems Biology, VIB, Ghent B-9052, Belgium.ORCID http://orcid.org/0000-0002-9948-9672
Fred SackDepartment of Botany, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
Jie LeKey Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, 20 Nanxincun, Xiangshan (Fragrant Hill), Haidian, Beijing 100093, China.
Chinese Academy of Sciences · CNGhent University · BEThe Ohio State University · USInstitute of Science and Technology Austria · ATNagoya University · JPNara Institute of Science and Technology · JPUniversity of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PIN proteins are auxin export carriers that direct intercellular auxin flow and in turn regulate many aspects of plant growth and development including responses to environmental changes. The Arabidopsis R2R3-MYB transcription factor FOUR LIPS (FLP) and its paralogue MYB88 regulate terminal divisions during stomatal development, as well as female reproductive development and stress responses. Here we show that FLP and MYB88 act redundantly but differentially in regulating the transcription of PIN3 and PIN7 in gravity-sensing cells of primary and lateral roots. On the one hand, FLP is involved in responses to gravity stimulation in primary roots, whereas on the other, FLP and MYB88 function complementarily in establishing the gravitropic set-point angles of lateral roots. Our results support a model in which FLP and MYB88 expression specifically determines the temporal-spatial patterns of PIN3 and PIN7 transcription that are closely associated with their preferential functions during root responses to gravity.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsChromatin ImmunoprecipitationElectrophoretic Mobility Shift AssayGlucuronidaseGravitropismIn Situ HybridizationOrganisms, Genetically ModifiedPlant RootsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerTranscription FactorsTranscription, GeneticArabidopsis ProteinsFLP protein, ArabidopsisGlucuronidaseMyb88 protein, ArabidopsisPIN3 protein, ArabidopsisPIN7 protein, ArabidopsisRNA, MessengerTranscription Factors

Identifiers

PMID26578169
PMCPMC4673497
OpenAlexW2261036960

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.