Evidence map›Paper›PMID 26575099›Full record

ArticleEpigenetics2015

Increased DUX4 expression during muscle differentiation correlates with decreased SMCHD1 protein levels at D4Z4.

Judit Balog, Peter E Thijssen, Sean Shadle, Kirsten R Straasheijm, Patrick J van der Vliet, Yvonne D Krom, Marlinde L van den Boogaard, Annika de Jong, Richard J L F Lemmers, Rabi Tawil and 2 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Epigenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 69 citations in OpenAlex.

  1. Review
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  17. Influence ofInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Judit Baloga Department of Human Genetics; Leiden University Medical Center; 2333ZA Leiden , The Netherlands.
Peter E Thijssena Department of Human Genetics; Leiden University Medical Center; 2333ZA Leiden , The Netherlands.
Sean Shadleb Division of Human Biology; Fred Hutchinson Cancer Research Center; Seattle 98109 , Washington , United States of America.
Kirsten R Straasheijma Department of Human Genetics; Leiden University Medical Center; 2333ZA Leiden , The Netherlands.
Patrick J van der Vlieta Department of Human Genetics; Leiden University Medical Center; 2333ZA Leiden , The Netherlands.
Yvonne D Kroma Department of Human Genetics; Leiden University Medical Center; 2333ZA Leiden , The Netherlands.
Marlinde L van den Boogaarda Department of Human Genetics; Leiden University Medical Center; 2333ZA Leiden , The Netherlands.
Annika de Jonga Department of Human Genetics; Leiden University Medical Center; 2333ZA Leiden , The Netherlands.
Richard J L F Lemmersa Department of Human Genetics; Leiden University Medical Center; 2333ZA Leiden , The Netherlands.
Rabi Tawilc Neuromuscular Disease Unit; Department of Neurology; University of Rochester Medical Center; Rochester 14642 , New York , United States of America.
Stephen J Tapscottb Division of Human Biology; Fred Hutchinson Cancer Research Center; Seattle 98109 , Washington , United States of America.
Silvère M van der Maarela Department of Human Genetics; Leiden University Medical Center; 2333ZA Leiden , The Netherlands.
Leiden University Medical Center · NLFred Hutch Cancer Center · USUniversity of Rochester Medical Center · US

Funding

The Pathogenesis of Facioscapulohumeral Muscular DystrophyP01NS069539 · NINDS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 2010 to 2019
$12.3M
MYOTONIC DYSTROPHY LOCUS CONTROLR01AR045203 · NIAMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 1998 to 2025
$9.4M
SMCHD1 Pathways as Candidate Targets for FSHDR01AR066248 · NIAMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 2014 to 2024
$4.5M
NIAMS NIH HHS R01AR045203NIAMS NIH HHS R01AR066248NINDS NIH HHS P01NS069539
6 · The paper itself

Abstract

Facioscapulohumeral muscular dystrophy is caused by incomplete epigenetic repression of the transcription factor DUX4 in skeletal muscle. A copy of DUX4 is located within each unit of the D4Z4 macrosatellite repeat array and its derepression in somatic cells is caused by either repeat array contraction (FSHD1) or by mutations in the chromatin repressor SMCHD1 (FSHD2). While DUX4 expression has thus far only been detected in FSHD muscle and muscle cell cultures, and increases with in vitro myogenic differentiation, the D4Z4 chromatin structure has only been studied in proliferating myoblasts or non-myogenic cells. We here show that SMCHD1 protein levels at D4Z4 decline during muscle cell differentiation and correlate with DUX4 derepression. In FSHD2, but not FSHD1, the loss of SMCHD1 repressor activity is partially compensated by increased Polycomb Repressive Complex 2 (PRC2)-mediated H3K27 trimethylation at D4Z4, a situation that can be mimicked by SMCHD1 knockdown in control myotubes. In contrast, moderate overexpression of SMCHD1 results in DUX4 silencing in FSHD1 and FSHD2 myotubes demonstrating that DUX4 derepression in FSHD is reversible. Together, we show that in FSHD1 and FSHD2 the decline in SMCHD1 protein levels during muscle cell differentiation renders skeletal muscle sensitive to DUX4.

Indexed as

Epigenesis, GeneticCell DifferentiationCell LineChromosomal Proteins, Non-HistoneDNA MethylationGene Expression RegulationHistone CodeHomeodomain ProteinsHumansMuscle DevelopmentMuscle, SkeletalMuscular Dystrophy, FacioscapulohumeralChromosomal Proteins, Non-HistoneDUX4L1 protein, humanHomeodomain ProteinsSMCHD1 protein, humanD4Z4DUX4FSHDmyogenesisPolycomb Repressive Complex 2SMCHD1transcriptional regulation

Identifiers

PMID26575099
PMCPMC4844215
OpenAlexW2212666428

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.