Evidence map›Paper›PMID 26574914›Full record

ArticleBiochemistry2015

H-NOX from Clostridium botulinum, like H-NOX from Thermoanaerobacter tengcongensis, Binds Oxygen but with a Less Stable Oxyferrous Heme Intermediate.

Gang Wu, Wen Liu, Vladimir Berka, Ah-Lim Tsai

Abstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Ultrafast dynamics of heme distortion in the OCommunications chemistry · 2021
    Article
  5. Review
  6. Gas Sensing by Bacterial H-NOX Proteins: An MD Study.Molecules (Basel, Switzerland) · 2020
    Article
  7. Bacterial Heme-Based Sensors of Nitric Oxide.Antioxidants & redox signaling · 2018
    Review
  8. Article
  9. Article
  10. Engineering proximalChemical science · 2017
    Article
  11. Article
  12. Bacterial Haemoprotein Sensors of NO: H-NOX and NosP.Advances in microbial physiology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Gang WuDivision of Hematology, Department of Internal Medicine, The University of Texas-Medical School at Houston , 6431 Fannin Street, Houston, Texas 77030, United States.
Wen LiuDivision of Hematology, Department of Internal Medicine, The University of Texas-Medical School at Houston , 6431 Fannin Street, Houston, Texas 77030, United States.
Vladimir BerkaDivision of Hematology, Department of Internal Medicine, The University of Texas-Medical School at Houston , 6431 Fannin Street, Houston, Texas 77030, United States.
Ah-Lim TsaiDivision of Hematology, Department of Internal Medicine, The University of Texas-Medical School at Houston , 6431 Fannin Street, Houston, Texas 77030, United States.

Funding

Radical Intermediates of Nitric Oxide Synthase & Myocardial Ischemia ReperfusionR01HL095820 · NHLBI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI TSAI, AH-LIM · 2010 to 2013
$1.8M
NHLBI NIH HHS R01 HL 095820NHLBI NIH HHS R01 HL095820
6 · The paper itself

Abstract

Heme nitric oxide/oxygen binding protein isolated from the obligate anaerobe Clostridium botulinum (Cb H-NOX) was previously reported to bind NO with a femtomolar K(D) (Nioche, P. et al. Science 2004, 306, 1550-1553). On the other hand, no oxyferrous Cb H-NOX was observed despite full conservation of the key residues that stabilize the oxyferrous complex in the H-NOX from Thermoanaerobacter tengcongensis (Tt H-NOX) (the same study). In this study, we re-measured the kinetics/affinities of Cb H-NOX for CO, NO, and O2. K(D)(CO) for the simple one-step equilibrium binding was 1.6 × 10(-7) M. The K(D)(NO) of Cb H-NOX was 8.0 × 10(-11) M for the first six-coordinate NO complex, and the previous femtomolar K(D)(NO) was actually an apparent K(D) for its multiple-step NO binding. An oxyferrous Cb H-NOX was clearly observed with a K(D)(O2) of 5.3 × 10(-5) M, which is significantly higher than Tt H-NOX's K(D)(O2) = 4.4 × 10(-8) M. The gaseous ligand binding of Cb H-NOX provides another supportive example for the "sliding scale rule" hypothesis (Tsai, A.-L. et al. Antioxid. Redox Signal. 2012, 17, 1246-1263), and the presence of hydrogen bond donor Tyr139 in Cb H-NOX selectively enhanced its affinity for oxygen.

Indexed as

Bacterial ProteinsBotulismCarbon MonoxideClostridium botulinumHemeHemeproteinsHumansKineticsNitric OxideOxygenProtein BindingThermoanaerobacterBacterial ProteinsCarbon MonoxideHemeHemeproteinsNitric OxideOxygen

Identifiers

PMID26574914
PMCPMC8344375

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.