Evidence map›Paper›PMID 26574436›Full record

ArticleThe Biochemical journal2016

Conformational dynamics of Ca2+-dependent responses in the polycystin-2 C-terminal tail.

Yifei Yang, Michael E Hodsdon, Elias J Lolis, Barbara E Ehrlich

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Transient Receptor Potential Channels and Calcium Signaling.Cold Spring Harbor perspectives in biology · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yifei YangDepartment of Laboratory Medicine, Yale University, New Haven, CT 06520, U.S.A. Department of Pharmacology, Yale University, New Haven, CT 06520, U.S.A.
Michael E HodsdonDepartment of Laboratory Medicine, Yale University, New Haven, CT 06520, U.S.A.
Elias J LolisDepartment of Pharmacology, Yale University, New Haven, CT 06520, U.S.A. elias.lolis@yale.edu barbara.ehrlich@yale.edu.
Barbara E EhrlichDepartment of Pharmacology, Yale University, New Haven, CT 06520, U.S.A. Department of Cellular and Molecular Physiology, Yale University, New Haven, CT 06520, U.S.A. elias.lolis@yale.edu barbara.ehrlich@yale.edu.
Yale University · US

Funding

Regulation of polycystin-2 channel activityR01DK087844 · NIDDK · YALE UNIVERSITY · PI BOGGON, TITUS JONATHON, EHRLICH, BARBARA E. · 2010 to 2013
$1.6M
A Device for Automating Titration Experiments in High-Resolution NMR SpectroscopyR21RR032351 · NCRR · YALE UNIVERSITY · PI HODSDON, MICHAEL E, KEELER, CAMILLE · 2011 to 2011
$207k
NCRR NIH HHS R21 RR032351NCRR NIH HHS R21RR032351NIDDK NIH HHS R01 DK087844
6 · The paper itself

Abstract

PC2 (polycystin-2) forms a Ca(2+)-permeable channel in the cell membrane and its function is regulated by cytosolic Ca(2+) levels. Mutations in the C-terminal tail of human PC2 (HPC2 Cterm) lead to autosomal dominant polycystic kidney disease. The HPC2 Cterm protein contains a Ca(2+)-binding site responsible for channel gating and function. To provide the foundation for understanding how Ca(2+) regulates the channel through the HPC2 Cterm, we characterized Ca(2+) binding and its conformational and dynamic responses within the HPC2 Cterm. By examining hydrogen-deuterium (H-D) exchange profiles, we show that part of the coiled-coil domain in the HPC2 Cterm forms a stable helix bundle regardless of the presence of Ca(2+). The HPC2 L1EF construct contains the Ca(2+)-binding EF-hand and the N-terminal linker 1 region without the downstream coiled coil. We show that the linker stabilizes the Ca(2+)-bound conformation of the EF-hand, thus enhancing its Ca(2+)-binding affinity to the same level as the HPC2 Cterm. In comparison, the coiled coil is not required for the high-affinity binding. By comparing the conformational dynamics of the HPC2 Cterm and HPC2 L1EF with saturating Ca(2+), we show that the HPC2 Cterm and HPC2 L1EF share a similar increase in structural stability upon Ca(2+) binding. Nevertheless, they have different profiles of H-D exchange under non-saturating Ca(2+) conditions, implying their different conformational exchange between the Ca(2+)-bound and -unbound states. The present study, for the first time, provides a complete map of dynamic responses to Ca(2+)-binding within the full-length HPC2 Cterm. Our results suggest mechanisms for functional regulation of the PC2 channel and PC2's roles in the pathophysiology of polycystic kidney disease.

Indexed as

Amino Acid SequenceCalciumHumansModels, MolecularMolecular Sequence DataProtein ConformationProtein Structure, TertiaryTRPP Cation ChannelsCalciumTRPP Cation ChannelsCa2+-binding proteinshydrogen–deuterium exchange mass spectrometryisothermal titration calorimetrynuclear magnetic resonancepolycystin-2

Identifiers

PMID26574436
PMCPMC12358015
OpenAlexW2174478619

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.