Evidence map›Paper›PMID 26572968›Full record

ArticleThe journal of physical chemistry. B2015

Effects of Mutations on the Reconfiguration Rate of α-Synuclein.

Srabasti Acharya, Shreya Saha, Basir Ahmad, Lisa J Lapidus

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Characterization of Amyloidogenic Peptide Aggregability in Helical Subspace.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  3. Predicting and Simulating Mutational Effects on Protein Folding Kinetics.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Prion protein dynamics before aggregation.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Srabasti AcharyaDepartment of Physics and Astronomy, and ‡Department of Biochemistry and Molecular Biology, Michigan State University , East Lansing, Michigan 48824, United States.
Shreya SahaDepartment of Physics and Astronomy, and ‡Department of Biochemistry and Molecular Biology, Michigan State University , East Lansing, Michigan 48824, United States.
Basir AhmadDepartment of Physics and Astronomy, and ‡Department of Biochemistry and Molecular Biology, Michigan State University , East Lansing, Michigan 48824, United States.
Lisa J LapidusDepartment of Physics and Astronomy, and ‡Department of Biochemistry and Molecular Biology, Michigan State University , East Lansing, Michigan 48824, United States.
Michigan State University · US

Funding

Preventing Protein Aggregation by Controlling Unfolded State DynamicsR01GM100908 · NIGMS · MICHIGAN STATE UNIVERSITY · PI LAPIDUS, LISA J · 2012 to 2016
$1.3M
NIGMS NIH HHS R01 GM100908
6 · The paper itself

Abstract

It is still poorly understood why α-synuclein, the intrinsically disordered protein involved in Parkinson's and other neurodegenerative diseases, is so prone to aggregation. Recent work has shown a correlation between the aggregation rate and the rate of diffusional reconfiguration by varying temperature and pH. Here we examine the effects of several point mutations in the sequence on the conformational ensemble and reconfiguration rate. We find that at lower temperatures the PD causing aggregation enhancing mutations slow down and aggregation reducing mutations drastically speed up intramolecular diffusion, as compared to the wild type sequence. However, at higher temperatures, one of three familial mutations that enhance aggregation slows intramolecular diffusion while non-natural mutations that inhibit aggregation speed up intramolecular diffusion. These results support the hypothesis that the first step of aggregation is kinetically controlled by reconfiguration in which the protein chain cannot reconfigure rapidly enough to escape oligomerization. Finally we provide physical and chemical insights into why small point mutations cause these dramatic changes in the conformational ensemble and dynamics.

Indexed as

Mutationalpha-Synucleinalpha-Synuclein

Identifiers

PMID26572968
PMCPMC4836914
OpenAlexW2435111897

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.