Evidence map›Paper›PMID 26572220›Full record

ArticleBMC infectious diseases2015

Differential proteomic analysis of virus-enriched fractions obtained from plasma pools of patients with dengue fever or severe dengue.

Romain Fragnoud, Marie Flamand, Frederic Reynier, Philippe Buchy, Vasna Duong, Alexandre Pachot, Glaucia Paranhos-Baccala, Frederic Bedin

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Observational
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Role of Platelet Cytokines in Dengue Virus Infection.Frontiers in cellular and infection microbiology · 2020
    Review
  12. Article
  13. Arthropod EVs mediate dengue virus transmission through interaction with a tetraspanin domain containing glycoprotein Tsp29Fb.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. The Complement System in Flavivirus Infections.Frontiers in microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Romain FragnoudMD3 Department, BioMerieux SA, 69280, Marcy l'Etoile, France. romain.fragnoud@hotmail.fr.
Marie FlamandUMR 3569 de Virologie Structurale, Institut Pasteur, 75015, Paris, France. marie.flamand@pasteur.fr.
Frederic ReynierBioASTER, 60007, Lyon, France. frederic.reynier@bioaster.org.
Philippe BuchyUnité de Virologie, Institut Pasteur Phnom-Penh, Phnom-Penh, Cambodia. pbuchy@pasteur-kh.org.
Vasna DuongUnité de Virologie, Institut Pasteur Phnom-Penh, Phnom-Penh, Cambodia. dvasna@pasteur-kh.org.
Alexandre PachotMD3 Department, BioMerieux SA, 69280, Marcy l'Etoile, France. alexandre.pachot@biomerieux.com.
Glaucia Paranhos-BaccalaEmerging Pathogens Laboratory Fondation Merieux, 69007, Lyon, France. glaucia.baccala@fondation-merieux.org.
Frederic BedinMD3 & NAD Departments, BioMerieux SA, 69280, Marcy l'Etoile, France. frederic.bedin@biomerieux.com.
bioMérieux (France) · FRInstitut Pasteur du Cambodge · KHBIOASTER · FRFondation Mérieux · FRInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDengue is the most widespread mosquito-borne viral disease of public health concern. In some patients, endothelial cell and platelet dysfunction lead to life-threatening hemorrhagic dengue fever or dengue shock syndrome. Prognostication of disease severity is urgently required to improve patient management. The pathogenesis of severe dengue has not been fully elucidated, and the role of host proteins associated with viral particles has received little exploration.

methodsThe proteomes of virion-enriched fractions purified from plasma pools of patients with dengue fever or severe dengue were compared. Virions were purified by ultracentrifugation combined with a water-insoluble polyelectrolyte-based technique. Following in-gel hydrolysis, peptides were analyzed by nano-liquid chromatography coupled to ion trap mass spectrometry and identified using data libraries.

resultsBoth dengue fever and severe dengue viral-enriched fractions contained identifiable viral envelope proteins and host cellular proteins. Canonical pathway analysis revealed the identified host proteins are mainly involved in the coagulation cascade, complement pathway or acute phase response signaling pathway. Some host proteins were over- or under-represented in plasma from patients with severe dengue compared to patients with dengue fever. ELISAs were used to validate differential expression of a selection of identified host proteins in individual plasma samples of patients with dengue fever compared to patients with severe dengue. Among 22 host proteins tested, two could differentiate between dengue fever and severe dengue in two independent cohorts (olfactomedin-4: area under the curve (AUC), 0.958; and platelet factor-4: AUC, 0.836).

conclusionA novel technique of virion-enrichment from plasma has allowed to identify two host proteins that have prognostic value for classifying patients with acute dengue who are more likely to develop a severe dengue. The impact of these host proteins on pathogenicity and disease outcome are discussed.

Indexed as

Host-Pathogen InteractionsAcute-Phase ReactionAdultDengueDengue VirusEnzyme-Linked Immunosorbent AssayFemaleGranulocyte Colony-Stimulating FactorHumansMalePlasmaPlatelet Factor 4ProteomicsSevere DengueTandem Mass SpectrometryViral Envelope ProteinsGranulocyte Colony-Stimulating FactorOLFM4 protein, humanPlatelet Factor 4Viral Envelope Proteins

Identifiers

PMID26572220
PMCPMC4647599
OpenAlexW2175716964

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.