Evidence map›Paper›PMID 26571387›Full record

ArticlePloS one2015

Tumor Repression of VCaP Xenografts by a Pyrrole-Imidazole Polyamide.

Amanda E Hargrove, Thomas F Martinez, Alissa A Hare, Alexis A Kurmis, John W Phillips, Sudha Sud, Kenneth J Pienta, Peter B Dervan

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. The past and presence of gene targeting: from chemicals and DNA via proteins to RNA.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  8. Review
  9. Article
  10. Mechanism of RNA polymerase II stalling by DNA alkylation.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  11. Article
  12. Review
  13. Review
  14. [Recognition study of double strand DNA with hairpin oligopolyamide].Sheng wu yi xue gong cheng xue za zhi = Journal of biomedical engineering = Shengwu yixue gongchengxue zazhi · 2017
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Amanda E HargroveDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America.
Thomas F MartinezDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America.
Alissa A HareDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America.
Alexis A KurmisDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America.
John W PhillipsDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America.
Sudha SudDepartment of Urology, University of Michigan Medical School, Ann Arbor, Michigan, United States of America.
Kenneth J PientaDepartment of Urology, University of Michigan Medical School, Ann Arbor, Michigan, United States of America.
Peter B DervanDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, United States of America.
California Institute of Technology · USMichigan United · US

Funding

PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
SEQUENCE SPECIFIC RECOGNITION OF DOUBLE HELICAL DNAR01GM027681 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI DERVAN, PETER B · 1985 to 2017
$4.5M
Interrogation of Androgen Receptor:Forkhead Interaction Using Py-Im PolyamidesF31CA159896 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI MARTINEZ, THOMAS FARID · 2011 to 2014
$165k
Inhibition of Estrogen Receptor-DNA binding with Pyrrole-Imidazole Polyamide SmalF32CA173977 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI HARE, ALISSA ANN · 2013 to 2015
$116k
DNA-binding polyamides as Hedgehog inhibitors in human carcinomaF32CA156833 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI HARGROVE, AMANDA E · 2011 to 2012
$97k
NCI NIH HHS F31 CA159896NCI NIH HHS F31CA159896NCI NIH HHS F32 CA156833NCI NIH HHS F32CA156833NCI NIH HHS F32 CA173977NCI NIH HHS F32CA173977NIGMS NIH HHS R01 GM027681NIGMS NIH HHS R01GM027681NIGMS NIH HHS T32 GM007616NIGMS NIH HHS T32GM007616
6 · The paper itself

Abstract

Pyrrole-imidazole (Py-Im) polyamides are high affinity DNA-binding small molecules that can inhibit protein-DNA interactions. In VCaP cells, a human prostate cancer cell line overexpressing both AR and the TMPRSS2-ERG gene fusion, an androgen response element (ARE)-targeted Py-Im polyamide significantly downregulates AR driven gene expression. Polyamide exposure to VCaP cells reduced proliferation without causing DNA damage. Py-Im polyamide treatment also reduced tumor growth in a VCaP mouse xenograft model. In addition to the effects on AR regulated transcription, RNA-seq analysis revealed inhibition of topoisomerase-DNA binding as a potential mechanism that contributes to the antitumor effects of polyamides in cell culture and in xenografts. These studies support the therapeutic potential of Py-Im polyamides to target multiple aspects of transcriptional regulation in prostate cancers without genotoxic stress.

Indexed as

AnimalsAntineoplastic AgentsCell Line, TumorCell ProliferationDNADNA DamageDNA TopoisomerasesGene Expression RegulationHumansImidazolesMaleMiceNylonsOncogene Proteins, FusionProstatic NeoplasmsProtein BindingAntineoplastic AgentsDNADNA TopoisomerasesimidazoleImidazolesNylonsOncogene Proteins, FusionPyrrolesReceptors, AndrogenTMPRSS2-ERG fusion protein, human

Identifiers

PMID26571387
PMCPMC4646452
OpenAlexW2181570564

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.