ArticlePloS one2015
Transcriptome Analysis of Cotton (Gossypium hirsutum L.) Genotypes That Are Susceptible, Resistant, and Hypersensitive to Reniform Nematode (Rotylenchulus reniformis).
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 28 citations in OpenAlex.
- Reniform Nematodes from Various Geographic Origins Uniquely Influenced Cotton Development.Plants (Basel, Switzerland) · 2026Article
- CRISPR-Cas9-Mediated Knockout ofPlants (Basel, Switzerland) · 2025Article
- Integrated transcriptome and BSA-seq analysis identifies a novel QTL for Meloidogyne graminicola resistance in rice HuaHang31.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Comparative transcriptomics of susceptible and resistant Cucumis metuliferus upon Meloidogyne incognita infection.Planta · 2025Article
- Transcriptome profiling and RNA-Seq SNP analysis of reniform nematode (Frontiers in plant science · 2025Article
- Nematode-resistance loci in upland cotton genomes are associated with structural differences.G3 (Bethesda, Md.) · 2024Article
- Transcriptome Analysis of Resistant Cotton Germplasm Responding to Reniform Nematodes.Plants (Basel, Switzerland) · 2024Article
- Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode.BMC plant biology · 2020Article
- Heat Shock Proteins: Dynamic Biomolecules to Counter Plant Biotic and Abiotic Stresses.International journal of molecular sciences · 2019Review
- Loss of cytosolic glucose-6-phosphate dehydrogenase increases the susceptibility of Arabidopsis thaliana to root-knot nematode infection.Annals of botany · 2019Article
- Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance.BMC plant biology · 2018Article
- Genome-wide association study of Gossypium arboreum resistance to reniform nematode.BMC genetics · 2018Article
- Differential expression of NBS-LRR-encoding genes in the root transcriptomes of two Solanum phureja genotypes with contrasting resistance to Globodera rostochiensis.BMC plant biology · 2017Article
- Dynamic expression analysis of early response genes induced by potato virus Y in PVY-resistant Nicotiana tabacum.Plant cell reports · 2017Article
Corrections and comments
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Reniform nematode is a semi-endoparasitic nematode species causing significant yield loss in numerous crops, including cotton (Gossypium hirsutum L.). An RNA-sequencing analysis was conducted to measure transcript abundance in reniform nematode susceptible (DP90 & SG747), resistant (BARBREN-713), and hypersensitive (LONREN-1) genotypes of cotton (Gossypium hirsutum L.) with and without reniform nematode infestation. Over 90 million trimmed high quality reads were assembled into 84,711 and 80, 353 transcripts using the G. arboreum and the G. raimondii genomes as references. Many transcripts were significantly differentially expressed between the three different genotypes both prior to and during nematode pathogenesis, including transcripts corresponding to the gene ontology categories of cell wall, hormone metabolism and signaling, redox reactions, secondary metabolism, transcriptional regulation, stress responses, and signaling. Further analysis revealed that a number of these differentially expressed transcripts mapped to the G. raimondii and/or the G. arboreum genomes within 1 megabase of quantitative trait loci that had previously been linked to reniform nematode resistance. Several resistance genes encoding proteins known to be strongly linked to pathogen perception and resistance, including LRR-like and NBS-LRR domain-containing proteins, were among the differentially expressed transcripts mapping near these quantitative trait loci. Further investigation is required to confirm a role for these transcripts in reniform nematode susceptibility, hypersensitivity, and/or resistance. This study presents the first systemic investigation of reniform nematode resistance-associated genes using different genotypes of cotton. The candidate reniform nematode resistance-associated genes identified in this study can serve as the basis for further functional analysis and aid in further development of reniform a nematode resistant cotton germplasm.
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