Evidence map›Paper›PMID 26571275›Full record

ArticlePloS one2015

CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis.

Mahdi Jalili, Ali Salehzadeh-Yazdi, Yazdan Asgari, Seyed Shahriar Arab, Marjan Yaghmaie, Ardeshir Ghavamzadeh, Kamran Alimoghaddam

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed.

  1. Review
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  14. Building Protein-Protein Interaction Graph Database Using Neo4j.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  15. Centrality Analysis of Protein-Protein Interaction Networks Using R.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  16. PRO-Simat: Protein network simulation and design tool.Computational and structural biotechnology journal · 2023
    Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mahdi JaliliHematology, Oncology and SCT Research Center, Tehran University of Medical Sciences, Tehran, Iran.
Ali Salehzadeh-YazdiHematology, Oncology and SCT Research Center, Tehran University of Medical Sciences, Tehran, Iran.
Yazdan AsgariSchool of Biological Sciences, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran.
Seyed Shahriar ArabSchool of Biological Sciences, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran.
Marjan YaghmaieHematology, Oncology and SCT Research Center, Tehran University of Medical Sciences, Tehran, Iran.
Ardeshir GhavamzadehHematology, Oncology and SCT Research Center, Tehran University of Medical Sciences, Tehran, Iran.
Kamran AlimoghaddamHematology, Oncology and SCT Research Center, Tehran University of Medical Sciences, Tehran, Iran.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Various disciplines are trying to solve one of the most noteworthy queries and broadly used concepts in biology, essentiality. Centrality is a primary index and a promising method for identifying essential nodes, particularly in biological networks. The newly created CentiServer is a comprehensive online resource that provides over 110 definitions of different centrality indices, their computational methods, and algorithms in the form of an encyclopedia. In addition, CentiServer allows users to calculate 55 centralities with the help of an interactive web-based application tool and provides a numerical result as a comma separated value (csv) file format or a mapped graphical format as a graph modeling language (GML) file. The standalone version of this application has been developed in the form of an R package. The web-based application (CentiServer) and R package (centiserve) are freely available at http://www.centiserver.org/.

Indexed as

Computational BiologyUser-Computer InterfaceAlgorithmsDatabases, FactualInternet

Identifiers

PMID26571275
PMCPMC4646361

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.