Evidence map›Paper›PMID 26569123›Full record

ArticleNature genetics2016

Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax).

Sangeet Lamichhaney, Guangyi Fan, Fredrik Widemo, Ulrika Gunnarsson, Doreen Schwochow Thalmann, Marc P Hoeppner, Susanne Kerje, Ulla Gustafson, Chengcheng Shi, He Zhang and 11 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 188 papers.

0numbers the graph read from it
0cells of the map it votes in
188citing papers in PubMed
24.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

188 citing papers in PubMed, 486 citations in OpenAlex.

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  7. A century of theories of balancing selection.Biological reviews of the Cambridge Philosophical Society · 2026
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  10. Behavioural ecology in the twenty-first century.Nature ecology & evolution · 2025
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  17. Functional genetic elements of a butterfly mimicry supergene.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
  19. Article
  20. Article

128 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 5 countries.

Sangeet LamichhaneyScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Guangyi FanBGI-Shenzhen, Shenzhen, China.
Fredrik WidemoDepartment of Wildlife, Fish and Environmental Studies, Swedish University of Agricultural Sciences, Umeå, Sweden.
Ulrika GunnarssonScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Doreen Schwochow ThalmannDepartment of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Marc P HoeppnerScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Susanne KerjeScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
Ulla GustafsonDepartment of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Chengcheng ShiBGI-Shenzhen, Shenzhen, China.
He ZhangBGI-Shenzhen, Shenzhen, China.
Wenbin ChenBGI-Shenzhen, Shenzhen, China.
Xinming LiangBGI-Shenzhen, Shenzhen, China.
Leihuan HuangBGI-Shenzhen, Shenzhen, China.
Jiahao WangBGI-Shenzhen, Shenzhen, China.
Enjing LiangBGI-Shenzhen, Shenzhen, China.
Qiong WuBGI-Shenzhen, Shenzhen, China.
Simon Ming-Yuen LeeState Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macao, China.
Xun XuBGI-Shenzhen, Shenzhen, China.
Jacob HöglundDepartment of Ecology and Genetics, Uppsala University, Uppsala, Sweden.
Xin LiuBGI-Shenzhen, Shenzhen, China.ORCID http://orcid.org/0000-0003-3256-2940
Leif AnderssonScience for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.
BGI Group (China) · CNUppsala University · SESwedish University of Agricultural Sciences · SEUniversity of Macau · MO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ruff is a Palearctic wader with a spectacular lekking behavior where highly ornamented males compete for females. This bird has one of the most remarkable mating systems in the animal kingdom, comprising three different male morphs (independents, satellites and faeders) that differ in behavior, plumage color and body size. Remarkably, the satellite and faeder morphs are controlled by dominant alleles. Here we have used whole-genome sequencing and resolved the enigma of how such complex phenotypic differences can have a simple genetic basis. The Satellite and Faeder alleles are both associated with a 4.5-Mb inversion that occurred about 3.8 million years ago. We propose an evolutionary scenario where the Satellite chromosome arose by a rare recombination event about 500,000 years ago. The ruff mating system is the result of an evolutionary process in which multiple genetic changes contributing to phenotypic differences between morphs have accumulated within the inverted region.

Indexed as

Biological EvolutionAmino Acid SequenceAnimalsBirdsChromosomesFemaleGenetics, PopulationGenomeMaleMolecular Sequence DataPhylogenyPolymorphism, Single NucleotideRecombination, GeneticReproductionSexual Behavior, Animal

Identifiers

PMID26569123
OpenAlexW2211860873

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.