Evidence map›Paper›PMID 26569117›Full record

ArticlePloS one2015

Comparative Genomics of NAC Transcriptional Factors in Angiosperms: Implications for the Adaptation and Diversification of Flowering Plants.

Alejandro Pereira-Santana, Luis David Alcaraz, Enrique Castaño, Lenin Sanchez-Calderon, Felipe Sanchez-Teyer, Luis Rodriguez-Zapata

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 52 citations in OpenAlex.

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  11. Does integument ariseFrontiers in plant science · 2022
    Article
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  16. Overexpression of aInternational journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Alejandro Pereira-SantanaUnidad de Biotecnología, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México.
Luis David AlcarazDepartamento de Ecología de la Biodiversidad, Instituto de Ecología, Universidad Nacional Autónoma de México, México City, D.F., México.
Enrique CastañoUnidad de Bioquímica y Biología Molecular de Plantas, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México.
Lenin Sanchez-CalderonLaboratorio de Biología Molecular de Plantas, Unidad Académica de Ciencias Biológicas, Universidad Autónoma de Zacatecas, Zacatecas, Zacatecas, México.
Felipe Sanchez-TeyerUnidad de Biotecnología, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México.
Luis Rodriguez-ZapataUnidad de Biotecnología, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México.
Secretaría de Investigación, Innovación y Educación Superior · MXUniversidad Autónoma de Zacatecas "Francisco García Salinas" · MXUniversidad Nacional Autónoma de México · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NAC proteins constitute one of the largest groups of plant-specific transcription factors and are known to play essential roles in various developmental processes. They are also important in plant responses to stresses such as drought, soil salinity, cold, and heat, which adversely affect growth. The current knowledge regarding the distribution of NAC proteins in plant lineages comes from relatively small samplings from the available data. In the present study, we broadened the number of plant species containing the NAC family origin and evolution to shed new light on the evolutionary history of this family in angiosperms. A comparative genome analysis was performed on 24 land plant species, and NAC ortholog groups were identified by means of bidirectional BLAST hits. Large NAC gene families are found in those species that have experienced more whole-genome duplication events, pointing to an expansion of the NAC family with divergent functions in flowering plants. A total of 3,187 NAC transcription factors that clustered into six major groups were used in the phylogenetic analysis. Many orthologous groups were found in the monocot and eudicot lineages, but only five orthologous groups were found between P. patens and each representative taxa of flowering plants. These groups were called basal orthologous groups and likely expanded into more recent taxa to cope with their environmental needs. This analysis on the angiosperm NAC family represents an effort to grasp the evolutionary and functional diversity within this gene family while providing a basis for further functional research on vascular plant gene families.

Indexed as

Biological EvolutionMultigene FamilyAcclimatizationAmino Acid MotifsCluster AnalysisEnvironmentGene DuplicationGenes, PlantGenetic VariationGenome, PlantGenomicsLikelihood FunctionsMagnoliopsidaMarkov ChainsPhylogenyPlant ProteinsPlant ProteinsTranscription Factors

Identifiers

PMID26569117
PMCPMC4646352
OpenAlexW2247000677

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.