ArticleStandards in genomic sciences2015
Complete genome sequencing of Dehalococcoides sp. strain UCH007 using a differential reads picking method.
Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- Genomic personalities ofISME communications · 2025Article
- Effects of ferrous iron supplementation on reductive dechlorination of tetrachloroethene and on methanogenic microbial community.FEMS microbiology ecology · 2021Article
- Biotechnology and nanotechnology for remediation of chlorinated volatile organic compounds: current perspectives.Environmental science and pollution research international · 2021Review
- Preparation and characterization of site-specific dechlorinating microbial inocula capable of complete dechlorination enriched in anaerobic microcosms amended with clay mineral.World journal of microbiology & biotechnology · 2020Article
- Biodegradation of Volatile Organic Compounds and Their Effects on Biodegradability under Co-Existing Conditions.Microbes and environments · 2017Review
- Isolation and genomic characterization of a Dehalococcoides strain suggests genomic rearrangement during culture.Scientific reports · 2017Article
- Microbial degradation of chloroethenes: a review.Environmental science and pollution research international · 2017Review
- Identification of Multiple Dehalogenase Genes Involved in Tetrachloroethene-to-Ethene Dechlorination in aBioMed research international · 2017Article
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Authors and funding
9 authors.
Funding
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Abstract
A novel Dehalococcoides sp. strain UCH007 was isolated from the groundwater polluted with chlorinated ethenes in Japan. This strain is capable of dechlorinating trichloroethene, cis-1,2-dichloroethene and vinyl chloride to ethene. Dehalococcoides bacteria are hardly cultivable, so genome sequencing has presented a challenge. In this study, we developed a differential reads picking method for mixed genomic DNA obtained from a co-culture, and applied it to the sequencing of strain UCH007. The genome of strain UCH007 consists of a 1,473,548-bp chromosome that encodes 1509 coding sequences including 29 putative reductive dehalogenase genes. Strain UCH007 is the first strain in the Victoria subgroup found to possess the pceA, tceA and vcrA genes.
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