Evidence map›Paper›PMID 26568112›Full record

ArticleMicrobiome2015

Variable responses of human and non-human primate gut microbiomes to a Western diet.

Katherine R Amato, Carl J Yeoman, Gabriela Cerda, Christopher A Schmitt, Jennifer Danzy Cramer, Margret E Berg Miller, Andres Gomez, Trudy R Turner, Brenda A Wilson, Rebecca M Stumpf and 4 more

Open access · goldAbstract read
In one paragraph

Article in Microbiome, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 147 citations in OpenAlex.

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  17. Characterizing the Gut Microbiota of Eurasian Otter (Animals : an open access journal from MDPI · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 1 country.

Katherine R AmatoDepartment of Anthropology, Northwestern University, Evanston, USA. katherine.amato@northwestern.edu.
Carl J YeomanDepartment of Range Sciences, Montana State University, Bozeman, USA. carl.yeoman@montana.edu.
Gabriela CerdaDepartment of Anthropology, University of Illinois, Urbana, USA. gcerda1188@gmail.com.
Christopher A SchmittDepartment of Anthropology, Boston University, Boston, USA. caschmit@bu.edu.
Jennifer Danzy CramerDepartment of Sociology, Anthropology, and Women's Studies, American Military University and American Public University, Charles Town, USA. jennifer.cramer@mycampus.apus.edu.
Margret E Berg MillerThe Institute for Genomic Biology, University of Illinois, Urbana, IL, 61801, USA. meberg@illinois.edu.
Andres GomezThe Institute for Genomic Biology, University of Illinois, Urbana, IL, 61801, USA. gomeza@umn.edu.
Trudy R TurnerDepartment of Anthropology, University of Wisconsin, Milwaukee, USA. trudy@uwm.edu.
Brenda A WilsonThe Institute for Genomic Biology, University of Illinois, Urbana, IL, 61801, USA. bawilson@life.illinois.edu.
Rebecca M StumpfDepartment of Anthropology, University of Illinois, Urbana, USA. rstumpf@illinois.edu.
Karen E NelsonThe J. Craig Venter Institute, Rockville, USA. knelson@jcvi.org.
Bryan A WhiteThe Institute for Genomic Biology, University of Illinois, Urbana, IL, 61801, USA. bwhite44@illinois.edu.
Rob KnightSchool of Medicine, University of California San Diego, La Jolla, USA. robknight@ucsd.edu.
Steven R LeighDepartment of Anthropology, University of Colorado Boulder, Boulder, USA. steven.leigh@colorado.edu.
University of Illinois Urbana-Champaign · USAmerican Military University · USBoston University · USJ. Craig Venter Institute · USMontana State University · USNorthwestern University · USUniversity of California, San Diego · USUniversity of Wisconsin–Milwaukee · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
Vervet Research Colony as a Biomedical ResourceP40OD010965 · OD · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI Matthew Jorgensen · 2012 to 2026
$14.6M
Vervet Monkey (Cercopithecus Aethiops) Genetic MapR01RR016300 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FREIMER, NELSON B. · 2002 to 2011
$6.3M
VERVET RESEARCH COLONY AS A BIOMEDICAL RESOURCE: AIDSP40RR019963 · NCRR · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI KAPLAN, JAY ROSS · 2005 to 2011
$6.2M
NCRR NIH HHS 5R01RR016300NCRR NIH HHS P40 RR019963NCRR NIH HHS R01 RR016300NIH HHS P40 OD010965NIH HHS P51 OD011132
6 · The paper itself

Abstract

backgroundThe human gut microbiota interacts closely with human diet and physiology. To better understand the mechanisms behind this relationship, gut microbiome research relies on complementing human studies with manipulations of animal models, including non-human primates. However, due to unique aspects of human diet and physiology, it is likely that host-gut microbe interactions operate differently in humans and non-human primates.

resultsHere, we show that the human microbiome reacts differently to a high-protein, high-fat Western diet than that of a model primate, the African green monkey, or vervet (Chlorocebus aethiops sabaeus). Specifically, humans exhibit increased relative abundance of Firmicutes and reduced relative abundance of Prevotella on a Western diet while vervets show the opposite pattern. Predictive metagenomics demonstrate an increased relative abundance of genes associated with carbohydrate metabolism in the microbiome of only humans consuming a Western diet.

conclusionsThese results suggest that the human gut microbiota has unique properties that are a result of changes in human diet and physiology across evolution or that may have contributed to the evolution of human physiology. Therefore, the role of animal models for understanding the relationship between the human gut microbiota and host metabolism must be re-focused.

Indexed as

Diet, High-FatDiet, WesternGastrointestinal MicrobiomeMicrobiotaAnimalsBacillotaBiological EvolutionCarbohydrate MetabolismChlorocebus aethiopsDietary ProteinsHumansMetagenomicsModels, AnimalPrevotellaDietary Proteins

Identifiers

PMID26568112
PMCPMC4645477
OpenAlexW2174792007

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.