Evidence map›Paper›PMID 26567513›Full record

ArticleCell host & microbe2015

The Ubiquitin Proteome of Toxoplasma gondii Reveals Roles for Protein Ubiquitination in Cell-Cycle Transitions.

Natalie C Silmon de Monerri, Rama R Yakubu, Allan L Chen, Peter J Bradley, Edward Nieves, Louis M Weiss, Kami Kim

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Review
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  9. Review
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    Article
  15. Proteomics Applications inPathogens (Basel, Switzerland) · 2023
    Review
  16. Article
  17. TgKDAC4: A Unique Deacetylase ofMicroorganisms · 2023
    Article
  18. Article
  19. Unravelling the sexual developmental biology ofFrontiers in cellular and infection microbiology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Natalie C Silmon de MonerriDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Rama R YakubuDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Allan L ChenDepartment of Microbiology, Immunology and Molecular Genetics, University of California Los Angeles, Los Angeles, CA 90095-1489, USA.
Peter J BradleyDepartment of Microbiology, Immunology and Molecular Genetics, University of California Los Angeles, Los Angeles, CA 90095-1489, USA.
Edward NievesDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Developmental & Molecular Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Louis M WeissDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Medicine, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Kami KimDepartment of Pathology, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Medicine, Albert Einstein College of Medicine, Bronx, NY 10461, USA; Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA. Electronic address: kami.kim@einstein.yu.edu.
Albert Einstein College of Medicine · USUniversity of California, Los Angeles · US

Funding

MULTIDISCIPLINARY TRAINING IN MICROBIAL PATHOGENESIST32AI007323 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Peter John Bradley · 1988 to 2026
$8.6M
A Systems Biology Approach to the Model Apicomplexan Toxoplasma gondiiRC4AI092801 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI KIM, KAMI, SULLIVAN, WILLIAM J · 2010 to 2010
$5.6M
Geographic Medicine and Emerging InfectionsT32AI070117 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI WEISS, LOUIS M. · 2008 to 2023
$5.1M
Toxoplasma Epigenomics and Gene ExpressionR01AI087625 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI KIM, KAMI · 2010 to 2014
$3.5M
The Role of Toxoplasma Rhoptries in Host Cell InfectionR01AI064616 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BRADLEY, PETER JOHN · 2006 to 2016
$3.5M
Toxoplasma gondii: cyst wallR01AI095094 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI WEISS, LOUIS M. · 2012 to 2016
$2.1M
LTQ Orbitrap Velos Mass Spectrometer SystemS10RR029398 · NCRR · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI ANGELETTI, RUTH HOGUE · 2010 to 2010
$963k
Microsporidiosis: Rational TherapeuticsR56AI093220 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI WEISS, LOUIS M. · 2011 to 2011
$415k
MASS SPECTROMETER SYSTEM: OBESITYS10RR019352 · NCRR · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI ANGELETTI, RUTH HOGUE · 2004 to 2004
$379k
2D-DIGE SYSTEM FOR PROTEOMICS: SIGNAL TRANSDUCT &CELL COMMUNICAT, &CELL BIOLS10RR021056 · NCRR · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI ANGELETTI, RUTH HOGUE · 2005 to 2005
$180k
NCRR NIH HHS 1S10RR019352NCRR NIH HHS 1S10RR021056NCRR NIH HHS S10 RR019352NCRR NIH HHS S10 RR021056NCRR NIH HHS S10 RR029398NIAID NIH HHS AI007323NIAID NIH HHS AI064616NIAID NIH HHS AI087625NIAID NIH HHS AI092801NIAID NIH HHS AI93220NIAID NIH HHS R01 AI064616NIAID NIH HHS R01 AI087625NIAID NIH HHS R01 AI095094NIAID NIH HHS R56 AI093220NIAID NIH HHS RC4 AI092801NIAID NIH HHS T32 AI007323NIAID NIH HHS T32 AI070117
6 · The paper itself

Abstract

Protein ubiquitination plays key roles in protein turnover, cellular signaling, and intracellular transport. The genome of Toxoplasma gondii encodes ubiquitination machinery, but the roles of this posttranslational modification (PTM) are unknown. To examine the prevalence and function of ubiquitination in T. gondii, we mapped the ubiquitin proteome of tachyzoites. Over 500 ubiquitin-modified proteins, with almost 1,000 sites, were identified on proteins with diverse localizations and functions. Enrichment analysis demonstrated that 35% of ubiquitinated proteins are cell-cycle regulated. Unexpectedly, most classic cell-cycle regulators conserved in T. gondii were not detected in the ubiquitinome. Furthermore, many ubiquitinated proteins localize to the cytoskeleton and inner membrane complex, a structure beneath the plasma membrane facilitating division and host invasion. Comparing the ubiquitinome with other PTM proteomes reveals waves of PTM enrichment during the cell cycle. Thus, T. gondii PTMs are implicated as critical regulators of cell division and cell-cycle transitions.

Indexed as

Cell CycleUbiquitinationForeskinHumansHydrophobic and Hydrophilic InteractionsMalePhylogenyProtein Processing, Post-TranslationalProteomeProtozoan ProteinsToxoplasmaUbiquitinProteomeProtozoan ProteinsUbiquitin

Identifiers

PMID26567513
PMCPMC4968887
OpenAlexW2178354439

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.