Evidence map›Paper›PMID 26566420›Full record

ArticleStandards in genomic sciences2015

High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1.

Aliya D Suleimanova, Anna A Toymentseva, Eugenia A Boulygina, Sergey V Kazakov, Ayslu M Mardanova, Nelly P Balaban, Margarita R Sharipova

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In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.5field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Aliya D SuleimanovaLaboratory of Biosynthesis and Bioengineering of the Enzymes, Institute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, Russia.
Anna A ToymentsevaInterdisciplinary Center for Proteomics Research, Kazan (Volga region) Federal University, Kazan, Russia.
Eugenia A BoulyginaOmics Technologies Laboratory, Kazan (Volga region) Federal University, Kazan, Russia.
Sergey V KazakovComputer Technologies Laboratory, Information Technologies, Mechanics & Optics University, Saint Petersburg, Russia.
Ayslu M MardanovaLaboratory of Biosynthesis and Bioengineering of the Enzymes, Institute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, Russia.
Nelly P BalabanLaboratory of Biosynthesis and Bioengineering of the Enzymes, Institute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, Russia.
Margarita R SharipovaLaboratory of Biosynthesis and Bioengineering of the Enzymes, Institute of Fundamental Medicine and Biology, Kazan (Volga region) Federal University, Kazan, Russia.
Kazan Federal University · RUITMO University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strain 3.5.1 was isolated from soils of the Republic of Tatarstan, Russia, on the basis of presence of a high phytate-degrading activity. Strains with such activities attract special interest because of its potential use as feed additives and natural manures. Strain 3.5.1 harbors a 99 % 16S rRNA nucleotide sequence similarity to different Pantoea species (P. vagans, P. ananatis, P. agglomerans, P. anthophila and Pantoea sp.) and exhibits unique biochemical properties that do not allow strain identification up to species. Moreover, the strain 3.5.1 shows a low ANI and MALDI-TOF Mass Spectrometry scores. Thus, it is likely that the strain 3.5.1 represents a new Pantoea species. Here, we present the genome sequence of Pantoea sp. strain 3.5.1. The 4,964,649 bp draft genome consists of 23 contigs with 4,556 protein-coding and 143 RNA genes. Genome sequencing and annotation revealed two phytase genes and putative regulatory genes controlling its activity.

Indexed as

454GenomeIon TorrentPantoeaPhytaseStrain 3.5.1

Identifiers

PMID26566420
PMCPMC4642748
OpenAlexW2176215001

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.