Evidence map›Paper›PMID 26565589›Full record

ArticleeLife2015

A forward genetic screen reveals novel independent regulators of ULBP1, an activating ligand for natural killer cells.

Benjamin G Gowen, Bryan Chim, Caleb D Marceau, Trever T Greene, Patrick Burr, Jeanmarie R Gonzalez, Charles R Hesser, Peter A Dietzen, Teal Russell, Alexandre Iannello and 5 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Benjamin G GowenDepartment of Molecular and Cell Biology, Cancer Research Laboratory, University of California, Berkeley, Berkeley, United States.
Bryan ChimLaboratory of Immunology, National Institute of Allergy and Infectious Diseases, Bethesda, United States.
Caleb D MarceauDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, United States.
Trever T GreeneDepartment of Molecular and Cell Biology, Cancer Research Laboratory, University of California, Berkeley, Berkeley, United States.
Patrick BurrLaboratory of Immunology, National Institute of Allergy and Infectious Diseases, Bethesda, United States.
Jeanmarie R GonzalezDepartment of Molecular and Cell Biology, Cancer Research Laboratory, University of California, Berkeley, Berkeley, United States.
Charles R HesserDepartment of Molecular and Cell Biology, Cancer Research Laboratory, University of California, Berkeley, Berkeley, United States.
Peter A DietzenDepartment of Molecular and Cell Biology, Cancer Research Laboratory, University of California, Berkeley, Berkeley, United States.
Teal RussellDepartment of Molecular and Cell Biology, Cancer Research Laboratory, University of California, Berkeley, Berkeley, United States.
Alexandre IannelloDepartment of Molecular and Cell Biology, Cancer Research Laboratory, University of California, Berkeley, Berkeley, United States.
Laurent CoscoyDepartment of Molecular and Cell Biology, Cancer Research Laboratory, University of California, Berkeley, Berkeley, United States.
Charles L SentmanCenter for Synthetic Immunity, Department of Microbiology and Immunology, Dartmouth Geisel School of Medicine, Lebanon, United States.
Jan E CaretteDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, United States.
Stefan A MuljoLaboratory of Immunology, National Institute of Allergy and Infectious Diseases, Bethesda, United States.
David H RauletDepartment of Molecular and Cell Biology, Cancer Research Laboratory, University of California, Berkeley, Berkeley, United States.
University of California, Berkeley · USNational Institute of Allergy and Infectious Diseases · USStanford University · USDartmouth College · US

Funding

MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
Roles of RNA-binding Proteins in Programming Gene Expression in MammalsZIAAI001185 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MULJO, STEFAN · 2013 to 2025
$11.0M
EXPRESSION OF CLASS I-SPECIFIC RECEPTORS IN NK CELLSR01AI039642 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI RAULET, DAVID H · 1996 to 2014
$4.9M
Genetic approaches to discover host factors critical to dengue virus infectionDP2AI104557 · NIAID · STANFORD UNIVERSITY · PI CARETTE, JAN E · 2012 to 2012
$2.3M
NIAID NIH HHS DP2 AI104557NIAID NIH HHS R01 AI039642NIAID NIH HHS T32 AI007328
6 · The paper itself

Abstract

Recognition and elimination of tumor cells by the immune system is crucial for limiting tumor growth. Natural killer (NK) cells become activated when the receptor NKG2D is engaged by ligands that are frequently upregulated in primary tumors and on cancer cell lines. However, the molecular mechanisms driving NKG2D ligand expression on tumor cells are not well defined. Using a forward genetic screen in a tumor-derived human cell line, we identified several novel factors supporting expression of the NKG2D ligand ULBP1. Our results show stepwise contributions of independent pathways working at multiple stages of ULBP1 biogenesis. Deeper investigation of selected hits from the screen showed that the transcription factor ATF4 drives ULBP1 gene expression in cancer cell lines, while the RNA-binding protein RBM4 supports ULBP1 expression by suppressing a novel alternatively spliced isoform of ULBP1 mRNA. These findings offer insight into the stress pathways that alert the immune system to danger.

Indexed as

Lymphocyte ActivationActivating Transcription Factor 4Cell Line, TumorGenetic TestingGPI-Linked ProteinsHumansIntracellular Signaling Peptides and ProteinsKiller Cells, NaturalNK Cell Lectin-Like Receptor Subfamily KRNA-Binding ProteinsActivating Transcription Factor 4ATF4 protein, humanGPI-Linked ProteinsIntracellular Signaling Peptides and ProteinsKLRK1 protein, humanNK Cell Lectin-Like Receptor Subfamily KRBM4 protein, humanRNA-Binding ProteinsULBP1 protein, humanalternative splicingcellular stressCRISPR/Cas9humanimmunologynatural killer cellsNKG2Dtumor immunology

Identifiers

PMID26565589
PMCPMC4629278
OpenAlexW2176406552

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.