Evidence map›Paper›PMID 26565397›Full record

ArticlePloS one2015

Biochemical Analysis of CagE: A VirB4 Homologue of Helicobacter pylori Cag-T4SS.

Mohd Shariq, Navin Kumar, Rajesh Kumari, Amarjeet Kumar, Naidu Subbarao, Gauranga Mukhopadhyay

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

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  3. Roles of the components of theFuture microbiology · 2024
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  4. A Proposal for a Consolidated Structural Model of the CagY Protein ofInternational journal of molecular sciences · 2023
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  7. Effects ofFrontiers in immunology · 2023
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  8. Hesperetin Inhibits Expression of Virulence Factors and Growth ofInternational journal of molecular sciences · 2021
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  9. Engagement of CEACAM1 byMicroorganisms · 2021
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  14. Defining theFrontiers in microbiology · 2020
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  15. Comparative genome analysis ofMicrobial genomics · 2019
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  18. Determination ofMedical journal of the Islamic Republic of Iran · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Mohd ShariqSpecial Centre for Molecular Medicine, Jawaharlal Nehru University, New Delhi, India.
Navin KumarDepartment of Biotechnology, All India Institute of Medical Sciences, New Delhi, India.
Rajesh KumariSpecial Centre for Molecular Medicine, Jawaharlal Nehru University, New Delhi, India.
Amarjeet KumarSchool of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, India.
Naidu SubbaraoSchool of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, India.
Gauranga MukhopadhyaySpecial Centre for Molecular Medicine, Jawaharlal Nehru University, New Delhi, India.
Jawaharlal Nehru University · INAll India Institute of Medical Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Helicobacter pylori are among the most successful human pathogens that harbour a distinct genomic segment called cag Pathogenicity Island (cag-PAI). This genomic segment codes for a type IV secretion system (Cag-T4SS) related to the prototypical VirB/D4 system of Agrobacterium tumefaciens (Ag), a plant pathogen. Some of the components of Cag-T4SS share homology to that of VirB proteins including putative energy providing CagE (HP0544), the largest VirB4 homologue. In Ag, VirB4 is required for the assembly of the system, substrate translocation and pilus formation, however, very little is known about CagE. Here we have characterised the protein biochemically, genetically, and microscopically and report that CagE is an inner membrane associated active NTPase and has multiple interacting partners including the inner membrane proteins CagV and Cagβ. Through CagV it is connected to the outer membrane sub-complex proteins. Stability of CagE is not dependent on several of the cag-PAI proteins tested. However, localisation and stability of the pilus associated CagI, CagL and surface associated CagH are affected in its absence. Stability of the inner membrane associated energetic component Cagβ, a VirD4 homologue seems to be partially affected in its absence. Additionally, CagA failed to cross the membrane barriers in its absence and no IL-8 induction is observed under infection condition. These results thus suggest the importance of CagE in Cag-T4SS functions. In future it may help in deciphering the mechanism of substrate translocation by the system.

Indexed as

Adenosine TriphosphatasesBacterial ProteinsCell LineHelicobacter InfectionsHelicobacter pyloriHumansModels, MolecularNucleoside-TriphosphataseProtein ConformationProtein Interaction MapsProtein StabilityAdenosine TriphosphatasesBacterial ProteinsNucleoside-TriphosphatasePicB protein, Helicobacter pylori

Identifiers

PMID26565397
PMCPMC4643968
OpenAlexW2179164585

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.