Evidence map›Paper›PMID 26565032›Full record

ArticleThe Journal of biological chemistry2016

In Vitro Characterization of the Type I Toxin-Antitoxin System bsrE/SR5 from Bacillus subtilis.

Christin Meißner, Natalie Jahn, Sabine Brantl

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Regulatory RNAs inSynthetic and systems biotechnology · 2024
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  7. Microorganisms · 2021
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  8. Intermolecular Communication inFrontiers in molecular biosciences · 2020
    Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Christin MeißnerFrom the AG Bakteriengenetik, Lehrstuhl für Genetik, Friedrich-Schiller-Universität Jena, D-07743 Jena, Germany.
Natalie JahnFrom the AG Bakteriengenetik, Lehrstuhl für Genetik, Friedrich-Schiller-Universität Jena, D-07743 Jena, Germany.
Sabine BrantlFrom the AG Bakteriengenetik, Lehrstuhl für Genetik, Friedrich-Schiller-Universität Jena, D-07743 Jena, Germany Sabine.Brantl@rz.uni-jena.de.
Friedrich Schiller University Jena · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BsrE/SR5 is a new type I toxin/antitoxin system located on the prophage-like region P6 of the Bacillus subtilis chromosome. The bsrE gene encoding a 30-amino acid hydrophobic toxin and the antitoxin gene sr5 overlap at their 3' ends by 112 bp. Overexpression of bsrE causes cell lysis on agar plates. Here, we present a detailed in vitro analysis of bsrE/SR5. The secondary structures of SR5, bsrE mRNA, and the SR5/bsrE RNA complex were determined. Apparent binding rate constants (kapp) of wild-type and mutated SR5 species with wild-type bsrE mRNA were calculated, and SR5 regions required for efficient inhibition of bsrE mRNA narrowed down. In vivo studies confirmed the in vitro data but indicated that a so far unknown RNA binding protein might exist in B. subtilis that can promote antitoxin/toxin RNA interaction. Using time course experiments, the binding pathway of SR5 and bsrE RNA was elucidated. A comparison with the previously well characterized type I TA system from the B. subtilis chromosome, bsrG/SR4, reveals similarities but also significant differences.

Indexed as

AntitoxinsBacillus subtilisBacterial ProteinsBacterial ToxinsGene Expression Regulation, BacterialNucleic Acid ConformationProtein BindingProtein Structure, SecondaryRNA, MessengerTime FactorsAntitoxinsBacterial ProteinsBacterial ToxinsRNA, Messengerantisense RNABacillusgene regulationRNA foldingRNA structure

Identifiers

PMID26565032
PMCPMC4705377
OpenAlexW2222272955

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.