Evidence map›Paper›PMID 26565029›Full record

ArticleThe Journal of biological chemistry2016

Synthetic Antibodies Inhibit Bcl-2-associated X Protein (BAX) through Blockade of the N-terminal Activation Site.

Onyinyechukwu Uchime, Zhou Dai, Nikolaos Biris, David Lee, Sachdev S Sidhu, Sheng Li, Jonathan R Lai, Evripidis Gavathiotis

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Mechanisms of BCL-2 family proteins in mitochondrial apoptosis.Nature reviews. Molecular cell biology · 2023
    Review
  7. Article
  8. Physiological and pharmacological modulation of BAX.Trends in pharmacological sciences · 2022
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Small-molecule allosteric inhibitors of BAX.Nature chemical biology · 2019
    Article
  15. Isolation of Synthetic Antibodies Against BCL-2-Associated X Protein (BAX).Methods in molecular biology (Clifton, N.J.) · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Progress in targeting the BCL-2 family of proteins.Current opinion in chemical biology · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Onyinyechukwu UchimeFrom the Departments of Biochemistry and Medicine, Albert Einstein Cancer Center, Wilf Family Cardiovascular Research Institute, Albert Einstein College of Medicine, Bronx, New York 10461.
Zhou Daithe Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461.
Nikolaos BirisFrom the Departments of Biochemistry and Medicine, Albert Einstein Cancer Center, Wilf Family Cardiovascular Research Institute, Albert Einstein College of Medicine, Bronx, New York 10461.
David Leethe School of Medicine, University of California, San Diego, San Diego, California 92093, and.
Sachdev S Sidhuthe Banting and Best Department of Medical Research and Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 3E1, Canada.
Sheng Lithe School of Medicine, University of California, San Diego, San Diego, California 92093, and.
Jonathan R Laithe Department of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461, jon.lai@einstein.yu.edu.
Evripidis GavathiotisFrom the Departments of Biochemistry and Medicine, Albert Einstein Cancer Center, Wilf Family Cardiovascular Research Institute, Albert Einstein College of Medicine, Bronx, New York 10461, evripidis.gavathiotis@einstein.yu.edu.
Albert Einstein College of Medicine · USUniversity of California, San Diego · USUniversity of Toronto · CA

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
ACTION OF LIPOLYTIC ENZYMESR01GM020501 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DENNIS, EDWARD A · 1985 to 2020
$7.3M
Mechanism of receptor-mediated entry and infection by filovirusesR01AI101436 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI CHANDRAN, KARTIK · 2012 to 2016
$4.0M
Small Molecule Activators of Pro-apoptotic BAX for Cancer TherapyR01CA178394 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI GAVATHIOTIS, EVRIPIDIS · 2014 to 2024
$3.7M
Targeting BAX Oligomerization in Hematologic DiseaseR00HL095929 · NHLBI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI GAVATHIOTIS, EVRIPIDIS · 2011 to 2013
$716k
Methods to Identify High-Affinity Antibodies that Target Tumor-Associated GlycansR21CA155472 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI LAI, JONATHAN R. · 2011 to 2013
$679k
Console and probe upgrade for 600 MHz NMRS10OD016305 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI COWBURN, DAVID · 2014 to 2014
$595k
Hybrid Methods for Prediction and Design of Novel Human Influenza AntibodiesR56AI110750 · NIAID · VANDERBILT UNIVERSITY · PI CROWE, JAMES E, MEILER, JENS · 2014 to 2014
$433k
Novel investigation of the mechanism of Bax ModulationF31CA186672 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI UCHIME, ONYINYECHUKWU CHIOMA · 2014 to 2016
$144k
NCI NIH HHS F31 CA186672NCI NIH HHS P30 CA013330NCI NIH HHS R01 CA178394NCI NIH HHS R01CA178394NCI NIH HHS R21 CA155472NCI NIH HHS R21CA155472NHLBI NIH HHS R00 HL095929NHLBI NIH HHS R00HL095929NIAID NIH HHS R01 AI101436NIAID NIH HHS R01AI101436NIAID NIH HHS R56 AI110750NIAID NIH HHS R56AI110750NIGMS NIH HHS R01 GM020501NIH HHS 1S10OD016305NIH HHS S10 OD016305
6 · The paper itself

Abstract

The BCL-2 protein family plays a critical role in regulating cellular commitment to mitochondrial apoptosis. Pro-apoptotic Bcl-2-associated X protein (BAX) is an executioner protein of the BCL-2 family that represents the gateway to mitochondrial apoptosis. Following cellular stresses that induce apoptosis, cytosolic BAX is activated and translocates to the mitochondria, where it inserts into the mitochondrial outer membrane to form a toxic pore. How the BAX activation pathway proceeds and how this may be inhibited is not yet completely understood. Here we describe synthetic antibody fragments (Fabs) as structural and biochemical probes to investigate the potential mechanisms of BAX regulation. These synthetic Fabs bind with high affinity to BAX and inhibit its activation by the BH3-only protein tBID (truncated Bcl2 interacting protein) in assays using liposomal membranes. Inhibition of BAX by a representative Fab, 3G11, prevented mitochondrial translocation of BAX and BAX-mediated cytochrome c release. Using NMR and hydrogen-deuterium exchange mass spectrometry, we showed that 3G11 forms a stoichiometric and stable complex without inducing a significant conformational change on monomeric and inactive BAX. We identified that the Fab-binding site on BAX involves residues of helices α1/α6 and the α1-α2 loop. Therefore, the inhibitory binding surface of 3G11 overlaps with the N-terminal activation site of BAX, suggesting a novel mechanism of BAX inhibition through direct binding to the BAX N-terminal activation site. The synthetic Fabs reported here reveal, as probes, novel mechanistic insights into BAX inhibition and provide a blueprint for developing inhibitors of BAX activation.

Indexed as

Amino Acid SequenceAntibodiesApoptosisbcl-2-Associated X ProteinBH3 Interacting Domain Death Agonist ProteinBinding SitesCytochromes cHumansImmunoglobulin Fab FragmentsLiposomesMagnetic Resonance SpectroscopyMitochondriaMitochondrial MembranesModels, MolecularMolecular Sequence DataMutant ProteinsAntibodiesbcl-2-Associated X ProteinBH3 Interacting Domain Death Agonist ProteinCytochromes cImmunoglobulin Fab FragmentsLiposomesMutant Proteinsantibody engineeringBAXB cell lymphoma 2 (Bcl-2) familymitochondrial apoptosisphage displayprotein structureprotein targetingstructure-functionsynthetic antibody

Identifiers

PMID26565029
PMCPMC4697190
OpenAlexW2153673646

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.