Evidence map›Paper›PMID 26564787›Full record

ArticleNature communications2015

Structure and dynamics of polymyxin-resistance-associated response regulator PmrA in complex with promoter DNA.

Yuan-Chao Lou, Tsai-Hsuan Weng, Yi-Chuan Li, Yi-Fen Kao, Wei-Feng Lin, Hwei-Ling Peng, Shan-Ho Chou, Chwan-Deng Hsiao, Chinpan Chen

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 59 citations in OpenAlex.

  1. In conversation with Sergey Stavisky.Nature neuroscience · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. PmrA Mutations in Drug-ResistantMicroorganisms · 2025
    Article
  6. Combatting Antibiotic-ResistantJournal of chemical information and modeling · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Regulatory role ofFrontiers in microbiology · 2024
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  11. Article
  12. Article
  13. Article
  14. Article
  15. Structural insights into the transcription activation mechanism of the global regulator GlnR from actinobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Real-time detection of response regulator phosphorylation dynamics in live bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Yuan-Chao LouInstitute of Biomedical Sciences, Academia Sinica, Taipei 115, Taiwan, ROC.
Tsai-Hsuan WengInstitute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan, ROC.
Yi-Chuan LiInstitute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan, ROC.
Yi-Fen KaoInstitute of Biomedical Sciences, Academia Sinica, Taipei 115, Taiwan, ROC.
Wei-Feng LinDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan, ROC.
Hwei-Ling PengDepartment of Biological Science and Technology, National Chiao Tung University, Hsinchu 300, Taiwan, ROC.
Shan-Ho ChouInstitute of Biochemistry, National Chung Hsing University, Taichung 40227, Taiwan, ROC.
Chwan-Deng HsiaoInstitute of Molecular Biology, Academia Sinica, Taipei 115, Taiwan, ROC.
Chinpan ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei 115, Taiwan, ROC.
Institute of Molecular Biology, Academia Sinica · TWInstitute of Biomedical Sciences, Academia Sinica · TWNational Chung Hsing University · TWNational Yang Ming Chiao Tung University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PmrA, an OmpR/PhoB family response regulator, manages genes for antibiotic resistance. Phosphorylation of OmpR/PhoB response regulator induces the formation of a symmetric dimer in the N-terminal receiver domain (REC), promoting two C-terminal DNA-binding domains (DBDs) to recognize promoter DNA to elicit adaptive responses. Recently, determination of the KdpE-DNA complex structure revealed an REC-DBD interface in the upstream protomer that may be necessary for transcription activation. Here, we report the 3.2-Å-resolution crystal structure of the PmrA-DNA complex, which reveals a similar yet different REC-DBD interface. However, NMR studies show that in the DNA-bound state, two domains tumble separately and an REC-DBD interaction is transiently populated in solution. Reporter gene analyses of PmrA variants with altered interface residues suggest that the interface is not crucial for supporting gene expression. We propose that REC-DBD interdomain dynamics and the DBD-DBD interface help PmrA interact with RNA polymerase holoenzyme to activate downstream gene transcription.

Indexed as

Promoter Regions, GeneticBacterial ProteinsDNA, BacterialDrug Resistance, BacterialGene Expression Regulation, BacterialKlebsiella pneumoniaeModels, MolecularPolymyxinsProtein Structure, TertiaryTrans-ActivatorsBacterial ProteinsDNA, BacterialpmrA protein, BacteriaPolymyxinsTrans-Activators

Identifiers

PMID26564787
PMCPMC4660055
OpenAlexW2175315431

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.