Evidence map›Paper›PMID 26564551›Full record

ArticleMolecular microbiology2016

Cyclic di-AMP mediates biofilm formation.

Xian Peng, Yang Zhang, Guangchun Bai, Xuedong Zhou, Hui Wu

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 164 citations in OpenAlex.

  1. Review
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  5. TrkA ofMicrobiology (Reading, England) · 2025
    Article
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  7. Article
  8. Review
  9. Review
  10. Article
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  12. Cyclic di-AMP alleviates periodontitis by activating PI3K/Akt/Nrf2 pathways.Frontiers in cellular and infection microbiology · 2025
    Article
  13. Review
  14. Bacterial cell volume regulation and the importance of cyclic di-AMP.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  15. Article
  16. c-di-AMP determines the hierarchical organization of bacterial RCK proteins.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  17. Article
  18. Review
  19. The multifaceted role of c-di-AMP signaling in the regulation ofFrontiers in cellular and infection microbiology · 2024
    Article
  20. Review

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Xian PengDepartment of Pediatric Dentistry, University of Alabama at Birmingham, School of Dentistry, Birmingham, AL, USA.
Yang ZhangCenter for Immunology and Microbial Disease, MC-151, Albany Medical College, 47 New Scotland Avenue, Albany, NY, USA.
Guangchun BaiCenter for Immunology and Microbial Disease, MC-151, Albany Medical College, 47 New Scotland Avenue, Albany, NY, USA.
Xuedong ZhouState Key Laboratory of Oral Diseases, Sichuan University, Chengdu, China.
Hui WuDepartment of Pediatric Dentistry, University of Alabama at Birmingham, School of Dentistry, Birmingham, AL, USA.
Albany Medical Center Hospital · USUniversity of Alabama at Birmingham · USSichuan University · CN

Funding

Glycosylation & Function of an Oral Streptococcal AdhesinR01DE017954 · NIDCR · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WU, HUI · 2007 to 2022
$5.8M
SMALL MOLECULE INHIBITORS OF CARIOGENIC BIOFILMSR01DE022350 · NIDCR · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Christian Corey Melander, Hui Wu · 2012 to 2026
$4.3M
Training in structural biology & glycobiologyF33DE022215 · NIDCR · IMPERIAL COLLEGE OF SCIENCE, TECHNOLOGY AND MEDICINE · PI WU, HUI · 2012 to 2012
$64k
NIDCR NIH HHS DE017954NIDCR NIH HHS F33 DE022215NIDCR NIH HHS R01 DE017954NIDCR NIH HHS R01 DE022350NIDCR NIH HHS R01DE022350
6 · The paper itself

Abstract

Cyclic di-AMP (c-di-AMP) is an emerging second messenger in bacteria. It has been shown to play important roles in bacterial fitness and virulence. However, transduction of c-di-AMP signaling in bacteria and the role of c-di-AMP in biofilm formation are not well understood. The level of c-di-AMP is modulated by activity of di-adenylyl cyclase that produces c-di-AMP and phosphodiesterase (PDE) that degrades c-di-AMP. In this study, we determined that increased c-di-AMP levels by deletion of the pdeA gene coding for a PDE promoted biofilm formation in Streptococcus mutans. Deletion of pdeA upregulated expression of gtfB, the gene coding for a major glucan producing enzyme. Inactivation of gtfB blocked the increased biofilm by the pdeA mutant. Two c-di-AMP binding proteins including CabPA (SMU_1562) and CabPB (SMU_1708) were identified. Interestingly, only CabPA deficiency inhibited both the increased biofilm formation and the upregulated expression of GtfB observed in the pdeA mutant. In addition, CabPA but not CabPB interacted with VicR, a known transcriptional factor that regulates expression of gtfB, suggesting that a signaling link between CabPA and GtfB through VicR. Increased biofilm by the pdeA deficiency also enhanced bacterial colonization of Drosophila in vivo. Taken together, our studies reveal a new role of c-di-AMP in mediating biofilm formation through a CabPA/VicR/GtfB signaling network in S. mutans.

Indexed as

Adenosine MonophosphateBacterial ProteinsBiofilmsCyclic AMPCyclic GMPDinucleoside PhosphatesGene Expression Regulation, BacterialPhosphoric Diester HydrolasesSignal TransductionStreptococcus mutansTranscription FactorsVirulenceAdenosine MonophosphateBacterial ProteinsCyclic AMPcyclic diadenosine phosphateCyclic GMPDinucleoside PhosphatesPhosphoric Diester HydrolasesTranscription Factors

Identifiers

PMID26564551
PMCPMC5003771
OpenAlexW2173686732

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.