Evidence map›Paper›PMID 26564204›Full record

ArticleThe Biochemical journal2016

An integrated biochemical system for nitrate assimilation and nitric oxide detoxification in Bradyrhizobium japonicum.

Juan J Cabrera, Ana Salas, María J Torres, Eulogio J Bedmar, David J Richardson, Andrew J Gates, María J Delgado

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 45 citations in OpenAlex.

  1. Nitrate reduction salvage pathway inFrontiers in microbiology · 2026
    Article
  2. Article
  3. Article
  4. Fine-Tuning Modulation of Oxidation-Mediated Posttranslational Control ofInternational journal of molecular sciences · 2022
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Frontiers in microbiology · 2019
    Article
  11. The Nitrate Assimilatory Pathway inFrontiers in microbiology · 2019
    Article
  12. Expanding the Regulon of theFrontiers in microbiology · 2019
    Article
  13. The Hemoglobin Bjgb FromFrontiers in microbiology · 2019
    Article
  14. Article
  15. FixKFrontiers in microbiology · 2017
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Juan J CabreraEstación Experimental del Zaidín, CSIC, PO Box 419, Granada 18080, Spain.
Ana SalasEstación Experimental del Zaidín, CSIC, PO Box 419, Granada 18080, Spain.
María J TorresEstación Experimental del Zaidín, CSIC, PO Box 419, Granada 18080, Spain.
Eulogio J BedmarEstación Experimental del Zaidín, CSIC, PO Box 419, Granada 18080, Spain.
David J RichardsonCentre for Molecular and Structural Biochemistry, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U.K. School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U.K.
Andrew J GatesCentre for Molecular and Structural Biochemistry, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U.K. School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, U.K. a.gates@uea.ac.uk mariajesus.delgado@eez.csic.es.
María J DelgadoEstación Experimental del Zaidín, CSIC, PO Box 419, Granada 18080, Spain a.gates@uea.ac.uk mariajesus.delgado@eez.csic.es.
Estación Experimental del Zaidín · ES

Funding

Biotechnology and Biological Sciences Research Council BB/M00256X/1
6 · The paper itself

Abstract

Rhizobia are recognized to establish N2-fixing symbiotic interactions with legume plants. Bradyrhizobium japonicum, the symbiont of soybeans, can denitrify and grow under free-living conditions with nitrate (NO3 (-)) or nitrite (NO2 (-)) as sole nitrogen source. Unlike related bacteria that assimilate NO3 (-), genes encoding the assimilatory NO3 (-) reductase (nasC) and NO2 (-) reductase (nirA) in B. japonicum are located at distinct chromosomal loci. The nasC gene is located with genes encoding an ABC-type NO3 (-) transporter, a major facilitator family NO3 (-)/NO2 (-) transporter (NarK), flavoprotein (Flp) and single-domain haemoglobin (termed Bjgb). However, nirA clusters with genes for a NO3 (-)/NO2 (-)-responsive regulator (NasS-NasT). In the present study, we demonstrate NasC and NirA are both key for NO3 (-) assimilation and that growth with NO3 (-), but not NO2 (-) requires flp, implying Flp may function as electron donor to NasC. In addition, bjgb and flp encode a nitric oxide (NO) detoxification system that functions to mitigate cytotoxic NO formed as a by-product of NO3 (-) assimilation. Additional experiments reveal NasT is required for NO3 (-)-responsive expression of the narK-bjgb-flp-nasC transcriptional unit and the nirA gene and that NasS is also involved in the regulatory control of this novel bipartite assimilatory NO3 (-)/NO2 (-) reductase pathway.

Indexed as

Bacterial ProteinsBradyrhizobiumGene Expression Regulation, BacterialMembrane Transport ProteinsNitratesNitric OxideNitrite ReductasesNitritesBacterial ProteinsMembrane Transport ProteinsNitratesNitric OxideNitrite ReductasesNitritesbacterial denitrificationbacterial haemoglobinnitrate reductionnitric oxide reductasenitrite reduction

Identifiers

PMID26564204
PMCPMC4724949
OpenAlexW2322876573

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.