Evidence map›Paper›PMID 26562701›Full record

ArticleSexually transmitted diseases2015

High Rate of β-Globin DNA Detection Validates Self-Sampling in Herpes Simplex Virus Shedding Studies.

Andrew Mujugira, Meei-Li Huang, Stacy Selke, Linda Drolette, Amalia S Magaret, Anna Wald

Open access · greenAbstract readValidation Study
In one paragraph

Article in Sexually transmitted diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Vaginal and Anal Microbiome duringPathogens (Basel, Switzerland) · 2021
    Article
  2. Article
  3. Rectal Microbiota Associated WithFrontiers in cellular and infection microbiology · 2019
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Andrew MujugiraFrom the *Departments of Global Health, †Epidemiology, ‡Laboratory Medicine, and §Medicine, University of Washington, Seattle, WA; and ¶Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
Meei-Li Huang
Stacy Selke
Linda Drolette
Amalia S Magaret
Anna Wald
University of Washington · USFred Hutch Cancer Center · USInfectious Disease Research Institute · US

Funding

THE PERINATAL COMPLICATIONS OF ASYMPTOMATIC GENITAL HERPES SIMPLEX VIRUSP01AI030731 · NIAID · UNIVERSITY OF WASHINGTON · PI JOHNSTON, CHRISTINE MICHELLE · 1991 to 2017
$34.3M
INTERNATIONAL TRAINING GRANT IN EPIDEMIOLOGYD43TW000007 · FIC · UNIVERSITY OF WASHINGTON · PI FARQUHAR, CAREY · 1988 to 2012
$16.3M
Clinical Research in HSV InfectionsK24AI071113 · NIAID · UNIVERSITY OF WASHINGTON · PI WALD, ANNA · 2006 to 2015
$1.7M
CLINICAL AND MOLECULAR STUDIES OF DRUG-RESISTANT MALARIAK01TW000007 · FIC · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI DORSEY, MATTHEW G · 1999 to 2005
$513k
FIC NIH HHS D43 TW000007FIC NIH HHS K01 TW000007NIAID NIH HHS K24 AI071113NIAID NIH HHS P01 AI 030731NIAID NIH HHS P01 AI030731
6 · The paper itself

Abstract

backgroundSelf-sampling is a convenient, feasible, and acceptable way of collecting genital specimens, but the veracity of reported self-collection is difficult to verify. We investigated whether a host gene, β-globin, can be used to confirm adequacy of self-collected mucosal and skin genital specimens in studies of genital herpes simplex virus type 2 (HSV-2) infection.

methodsHerpes simplex virus type 2-seropositive adults self-collected daily anogenital and oral swabs. Mucosal samples were tested for HSV DNA using a real-time quantitative polymerase chain reaction assay. A real-time Taqman polymerase chain reaction detecting the β-globin gene was used to quantify host cells.

resultsOne hundred twelve participants collected 5559 genital and 2002 oral swabs. Sixty (54%) were women, 65% were HSV-2 seropositive, and 35% were HSV-1 and HSV-2 seropositive by Western blot. β-globin DNA was detected in 99% and 93% of swabs obtained from women and men, respectively. The quantity of β-globin DNA detected was significantly higher when HSV was present in genital swabs in women (0.1 log10 copies/mL; P = 0.001) and in men (0.6 log10 copies/mL; P < 0.001), but not in oral swabs in women (0.2 log10 copies/mL; P = 0.08) or men (0.0 log10 copies/mL; P = 0.70).

conclusionsHuman β-globin DNA detection rate was high, and the quantity obtained significantly increased with genital, but not oral HSV shedding. The high rate of β-globin DNA detection is consistent with high adherence to study procedures in longitudinal studies of genital herpes shedding.

Indexed as

Virus SheddingAdultbeta-GlobinsDNA, ViralFeasibility StudiesFemaleHerpes GenitalisHerpesvirus 2, HumanHumansMaleMouthPenisPolymerase Chain ReactionSelf CareSensitivity and SpecificitySpecimen Handlingbeta-GlobinsDNA, Viral

Identifiers

PMID26562701
PMCPMC4803496
OpenAlexW2339918463

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.