Evidence map›Paper›PMID 26562022›Full record

ArticlePloS one2015

Quantifying Integrated Proteomic Responses to Iron Stress in the Globally Important Marine Diazotroph Trichodesmium.

Joseph T Snow, Despo Polyviou, Paul Skipp, Nathan A M Chrismas, Andrew Hitchcock, Richard Geider, C Mark Moore, Thomas S Bibby

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  3. A redox switch allows binding of Fe(II) and Fe(III) ions in the cyanobacterial iron-binding protein FutA fromProceedings of the National Academy of Sciences of the United States of America · 2024
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  6. Diurnally dynamic iron allocation promotes NComputational and structural biotechnology journal · 2023
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  7. Article
  8. Article
  9. Biogeography of CyanobacterialFrontiers in microbiology · 2019
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Joseph T SnowOcean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, United Kingdom.
Despo PolyviouOcean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, United Kingdom.
Paul SkippCentre for Proteomic Research, University of Southampton, Southampton, United Kingdom.
Nathan A M ChrismasSchool of Geographical Sciences, University of Bristol, University Road, Clifton, Bristol, United Kingdom.
Andrew HitchcockOcean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, United Kingdom.
Richard GeiderSchool of Biological Sciences, University of Essex, Colchester, United Kingdom.
C Mark MooreOcean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, United Kingdom.
Thomas S BibbyOcean and Earth Science, National Oceanography Centre Southampton, University of Southampton, Southampton, United Kingdom.
University of Southampton · GBNational Oceanography Centre · GBUniversity of Bristol · GBUniversity of Essex · GBUniversity of Manchester · GBUniversity of Sheffield · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trichodesmium is a biogeochemically important marine cyanobacterium, responsible for a significant proportion of the annual 'new' nitrogen introduced into the global ocean. These non-heterocystous filamentous diazotrophs employ a potentially unique strategy of near-concurrent nitrogen fixation and oxygenic photosynthesis, potentially burdening Trichodesmium with a particularly high iron requirement due to the iron-binding proteins involved in these processes. Iron availability may therefore have a significant influence on the biogeography of Trichodesmium. Previous investigations of molecular responses to iron stress in this keystone marine microbe have largely been targeted. Here a holistic approach was taken using a label-free quantitative proteomics technique (MSE) to reveal a sophisticated multi-faceted proteomic response of Trichodesmium erythraeum IMS101 to iron stress. Increased abundances of proteins known to be involved in acclimation to iron stress and proteins known or predicted to be involved in iron uptake were observed, alongside decreases in the abundances of iron-binding proteins involved in photosynthesis and nitrogen fixation. Preferential loss of proteins with a high iron content contributed to overall reductions of 55-60% in estimated proteomic iron requirements. Changes in the abundances of iron-binding proteins also suggested the potential importance of alternate photosynthetic pathways as Trichodesmium reallocates the limiting resource under iron stress. Trichodesmium therefore displays a significant and integrated proteomic response to iron availability that likely contributes to the ecological success of this species in the ocean.

Indexed as

Bacterial ProteinsChromatography, LiquidCyanobacteriaDose-Response Relationship, DrugIronMass SpectrometryProteomeProteomicsStress, PhysiologicalBacterial ProteinsIronProteome

Identifiers

PMID26562022
PMCPMC4642986
OpenAlexW2408919228

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.