Evidence map›Paper›PMID 26561582›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Electrochemical evidence that pyranopterin redox chemistry controls the catalysis of YedY, a mononuclear Mo enzyme.

Hope Adamson, Alexandr N Simonov, Michelina Kierzek, Richard A Rothery, Joel H Weiner, Alan M Bond, Alison Parkin

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 49 citations in OpenAlex.

  1. Semiartificial COChemical reviews · 2026
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  12. Deconvolution of reduction potentials of formate dehydrogenase from Cupriavidus necator.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
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  20. YedY: A Mononuclear Molybdenum Enzyme with a Redox-Active Ligand?Chembiochem : a European journal of chemical biology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Hope AdamsonDepartment of Chemistry, University of York, Heslington, York YO10 5DD, United Kingdom;
Alexandr N SimonovSchool of Chemistry, Monash University, Clayton, VIC 3800, Australia;
Michelina KierzekDepartment of Biochemistry, University of Alberta, Edmonton, AB T6G 2H7, Canada.
Richard A RotheryDepartment of Biochemistry, University of Alberta, Edmonton, AB T6G 2H7, Canada.
Joel H WeinerDepartment of Biochemistry, University of Alberta, Edmonton, AB T6G 2H7, Canada.
Alan M BondSchool of Chemistry, Monash University, Clayton, VIC 3800, Australia;
Alison ParkinDepartment of Chemistry, University of York, Heslington, York YO10 5DD, United Kingdom; alison.parkin@york.ac.uk.ORCID http://orcid.org/0000-0003-4715-7200
University of Alberta · CAMonash University · AUUniversity of York · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F017316/1Canadian Institutes of Health Research MOP15292
6 · The paper itself

Abstract

A long-standing contradiction in the field of mononuclear Mo enzyme research is that small-molecule chemistry on active-site mimic compounds predicts ligand participation in the electron transfer reactions, but biochemical measurements only suggest metal-centered catalytic electron transfer. With the simultaneous measurement of substrate turnover and reversible electron transfer that is provided by Fourier-transformed alternating-current voltammetry, we show that Escherichia coli YedY is a mononuclear Mo enzyme that reconciles this conflict. In YedY, addition of three protons and three electrons to the well-characterized "as-isolated" Mo(V) oxidation state is needed to initiate the catalytic reduction of either dimethyl sulfoxide or trimethylamine N-oxide. Based on comparison with earlier studies and our UV-vis redox titration data, we assign the reversible one-proton and one-electron reduction process centered around +174 mV vs. standard hydrogen electrode at pH 7 to a Mo(V)-to-Mo(IV) conversion but ascribe the two-proton and two-electron transition occurring at negative potential to the organic pyranopterin ligand system. We predict that a dihydro-to-tetrahydro transition is needed to generate the catalytically active state of the enzyme. This is a previously unidentified mechanism, suggested by the structural simplicity of YedY, a protein in which Mo is the only metal site.

Indexed as

CatalysisCatalytic DomainElectrochemistryEscherichia coli ProteinsOxidation-ReductionOxidoreductasesPterinsEscherichia coli ProteinsOxidoreductasesPterinspyranopterinYedY protein, E coliFourier-transformed alternating-current voltammetrymononuclear molybdenum enzymeprotein film electrochemistrypyranopterinYedY

Identifiers

PMID26561582
PMCPMC4664312
OpenAlexW2100099608

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.