Evidence map›Paper›PMID 26560693›Full record

ArticleNature communications2015

The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling.

Alex Zelter, Massimiliano Bonomi, Jae Ook Kim, Neil T Umbreit, Michael R Hoopmann, Richard Johnson, Michael Riffle, Daniel Jaschob, Michael J MacCoss, Robert L Moritz and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
  2. Review
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  14. Article
  15. Review
  16. High-density chemical cross-linking for modeling protein interactions.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alex ZelterDepartment of Biochemistry, University of Washington, Seattle, Washington 98195, USA.
Massimiliano BonomiDepartment of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK.
Jae Ook KimDepartment of Biochemistry, University of Washington, Seattle, Washington 98195, USA.
Neil T UmbreitDepartment of Biochemistry, University of Washington, Seattle, Washington 98195, USA.
Michael R HoopmannInstitute for Systems Biology, Seattle, Washington 98109, USA.
Richard JohnsonDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Michael RiffleDepartment of Biochemistry, University of Washington, Seattle, Washington 98195, USA.
Daniel JaschobDepartment of Biochemistry, University of Washington, Seattle, Washington 98195, USA.
Michael J MacCossDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Robert L MoritzInstitute for Systems Biology, Seattle, Washington 98109, USA.
Trisha N DavisDepartment of Biochemistry, University of Washington, Seattle, Washington 98195, USA.ORCID http://orcid.org/0000-0003-4797-3152

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
MOLECULAR ANALYSIS OF THE SPINDLE POLE BODYR01GM040506 · NIGMS · UNIVERSITY OF WASHINGTON · PI DAVIS, TRISHA N. · 1988 to 2018
$8.6M
Shortening the development cycle time of Trans Proteomic Pipeline tools with high performance computingR01GM087221 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DEUTSCH, ERIC, MORITZ, ROBERT L · 2010 to 2021
$6.0M
FAIMS-Selected Reaction Monitoring to Quantitative Protein Networks in DiseaseS10RR027584 · NCRR · INSTITUTE FOR SYSTEMS BIOLOGY · PI MORITZ, ROBERT L · 2011 to 2011
$576k
NCRR NIH HHS S10 RR027584NCRR NIH HHS S10RR027584NIGMS NIH HHS 2P50 GM076547NIGMS NIH HHS GM087221NIGMS NIH HHS P41 GM103533NIGMS NIH HHS P50 GM076547NIGMS NIH HHS R01 GM040506NIGMS NIH HHS R01 GM087221NIGMS NIH HHS T32 GM008268
6 · The paper itself

Abstract

Accurate segregation of chromosomes during cell division is essential. The Dam1 complex binds kinetochores to microtubules and its oligomerization is required to form strong attachments. It is a key target of Aurora B kinase, which destabilizes erroneous attachments allowing subsequent correction. Understanding the roles and regulation of the Dam1 complex requires structural information. Here we apply cross-linking/mass spectrometry and structural modelling to determine the molecular architecture of the Dam1 complex. We find microtubule attachment is accompanied by substantial conformational changes, with direct binding mediated by the carboxy termini of Dam1p and Duo1p. Aurora B phosphorylation of Dam1p C terminus weakens direct interaction with the microtubule. Furthermore, the Dam1p amino terminus forms an interaction interface between Dam1 complexes, which is also disrupted by phosphorylation. Our results demonstrate that Aurora B inhibits both direct interaction with the microtubule and oligomerization of the Dam1 complex to drive error correction during mitosis.

Indexed as

Amino Acid SequenceAnimalsAurora Kinase BCattleHumansKinetochoresMass SpectrometryMicrotubulesModels, MolecularNeoplasm ProteinsProtein ConformationAURKB protein, humanAurora Kinase BBCAS2 protein, humanNeoplasm Proteins

Identifiers

PMID26560693
PMCPMC4660060

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.