Evidence map›Paper›PMID 26560462›Full record

ArticleBMC biology2015

Control of vein network topology by auxin transport.

Carla Verna, Megan G Sawchuk, Nguyen Manh Linh, Enrico Scarpella

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
8.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 60 citations in OpenAlex.

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  14. Individuality, self and sociality of vascular plants.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Carla VernaDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada. cdeagost@ualberta.ca.
Megan G SawchukDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada. megangsawchuk@gmail.com.
Nguyen Manh LinhDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada. nguyenma@ualberta.ca.
Enrico ScarpellaDepartment of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada. enrico.scarpella@ualberta.ca.
University of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTissue networks such as the vascular networks of plant and animal organs transport signals and nutrients in most multicellular organisms. The transport function of tissue networks depends on topological features such as the number of networks' components and the components' connectedness; yet what controls tissue network topology is largely unknown, partly because of the difficulties in quantifying the effects of genes on tissue network topology. We address this problem for the vein networks of plant leaves by introducing biologically motivated descriptors of vein network topology; we combine these descriptors with cellular imaging and molecular genetic analysis; and we apply this combination of approaches to leaves of Arabidopsis thaliana that lack function of, overexpress or misexpress combinations of four PIN-FORMED (PIN) genes--PIN1, PIN5, PIN6, and PIN8--which encode transporters of the plant signal auxin and are known to control vein network geometry.

resultsWe find that PIN1 inhibits vein formation and connection, and that PIN6 acts redundantly to PIN1 in these processes; however, the functions of PIN6 in vein formation are nonhomologous to those of PIN1, while the functions of PIN6 in vein connection are homologous to those of PIN1. We further find that PIN8 provides functions redundant and homologous to those of PIN6 in PIN1-dependent inhibition of vein formation, but that PIN8 has no functions in PIN1/PIN6-dependent inhibition of vein connection. Finally, we find that PIN5 promotes vein formation; that all the vein-formation-promoting functions of PIN5 are redundantly inhibited by PIN6 and PIN8; and that these functions of PIN5, PIN6, and PIN8 are independent of PIN1.

conclusionsOur results suggest that PIN-mediated auxin transport controls the formation of veins and their connection into networks.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsBiological TransportIndoleacetic AcidsMembrane Transport ProteinsPlant LeavesArabidopsis ProteinsIndoleacetic AcidsMembrane Transport Proteins

Identifiers

PMID26560462
PMCPMC4641347
OpenAlexW2161629263

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.