Evidence map›Paper›PMID 26560353›Full record

ArticleMolecular biology and evolution2016

No Accumulation of Transposable Elements in Asexual Arthropods.

Jens Bast, Ina Schaefer, Tanja Schwander, Mark Maraun, Stefan Scheu, Ken Kraaijeveld

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
12.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. The Role of Transposable Elements in Sexual Development.Frontiers in behavioral neuroscience · 2022
    Review
  10. Article
  11. Article
  12. Haplotype divergence supports long-term asexuality in the oribatid miteProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Genomic Features of Parthenogenetic Animals.The Journal of heredity · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jens BastDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland mail@jensbast.com.
Ina SchaeferJ.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Goettingen, Goettingen, Germany.
Tanja SchwanderDepartment of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
Mark MaraunJ.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Goettingen, Goettingen, Germany.
Stefan ScheuJ.F. Blumenbach Institute of Zoology and Anthropology, Georg August University Goettingen, Goettingen, Germany.
Ken KraaijeveldDepartment of Ecological Science, VU University Amsterdam, Amsterdam, The Netherlands Leiden Genome Technology Center, Department of Human genetics, Leiden University Medical Center, Leiden, The Netherlands.
University of Lausanne · CHVrije Universiteit Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements (TEs) and other repetitive DNA can accumulate in the absence of recombination, a process contributing to the degeneration of Y-chromosomes and other nonrecombining genome portions. A similar accumulation of repetitive DNA is expected for asexually reproducing species, given their entire genome is effectively nonrecombining. We tested this expectation by comparing the whole-genome TE loads of five asexual arthropod lineages and their sexual relatives, including asexual and sexual lineages of crustaceans (Daphnia water fleas), insects (Leptopilina wasps), and mites (Oribatida). Surprisingly, there was no evidence for increased TE load in genomes of asexual as compared to sexual lineages, neither for all classes of repetitive elements combined nor for specific TE families. Our study therefore suggests that nonrecombining genomes do not accumulate TEs like nonrecombining genomic regions of sexual lineages. Even if a slight but undetected increase of TEs were caused by asexual reproduction, it appears to be negligible compared to variance between species caused by processes unrelated to reproductive mode. It remains to be determined if molecular mechanisms underlying genome regulation in asexuals hamper TE activity. Alternatively, the differences in TE dynamics between nonrecombining genomes in asexual lineages versus nonrecombining genome portions in sexual species might stem from selection for benign TEs in asexual lineages because of the lack of genetic conflict between TEs and their hosts and/or because asexual lineages may only arise from sexual ancestors with particularly low TE loads.

Indexed as

DNA Transposable ElementsEvolution, MolecularAnimalsArthropodsGenomeGenomicsReproduction, AsexualDNA Transposable Elementsevolution of sexgenetic loadoribatid mitesparthenogenesisTE accumulationtransposable elements

Identifiers

PMID26560353
PMCPMC4760076
OpenAlexW2190810592

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.