Evidence map›Paper›PMID 26559974›Full record

ArticleThe Journal of biological chemistry2016

Structure and Energetics of Allosteric Regulation of HCN2 Ion Channels by Cyclic Nucleotides.

Hannah A DeBerg, Peter S Brzovic, Galen E Flynn, William N Zagotta, Stefan Stoll

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
8.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  8. Article
  9. HCN2 Ion Channels Drive Pain in Rodent Models of Migraine.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Insights into the molecular mechanism for hyperpolarization-dependent activation of HCN channels.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  17. Insights on the Structure, Molecular Weight and Activity of an Antibacterial Protein-Polymer Hybrid.Chemphyschem : a European journal of chemical physics and physical chemistry · 2018
    Article
  18. Review
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Hannah A DeBergFrom the Departments of Chemistry, Physiology and Biophysics, and.
Peter S BrzovicBiochemistry, University of Washington, Seattle, Washington 98195.
Galen E FlynnPhysiology and Biophysics, and.
William N ZagottaPhysiology and Biophysics, and zagotta@uw.edu.
Stefan StollFrom the Departments of Chemistry, Physiology and Biophysics, and stst@uw.edu.
Institute of Molecular Biology and Biophysics · RUUniversity of Washington · US

Funding

GATING MECHANISMS OF RETINAL ROD CGMP-ACTIVATED CHANNELSR01EY010329 · NEI · UNIVERSITY OF WASHINGTON · PI ZAGOTTA, WILLIAM N · 1994 to 2023
$7.7M
Unconventional Interactions of Human Ubiquitin Conjugating EnzymesR01GM098503 · NIGMS · UNIVERSITY OF WASHINGTON · PI BRZOVIC, PETER S · 2012 to 2016
$1.5M
NEI NIH HHS EY010329NEI NIH HHS R01 EY010329NIGMS NIH HHS GM098503NIGMS NIH HHS R01 GM098503
6 · The paper itself

Abstract

Hyperpolarization-activated cyclic nucleotide-gated (HCN) ion channels play an important role in regulating electrical activity in the heart and brain. They are gated by the binding of cyclic nucleotides to a conserved, intracellular cyclic nucleotide-binding domain (CNBD), which is connected to the channel pore by a C-linker region. Binding of cyclic nucleotides increases the rate and extent of channel activation and shifts it to less hyperpolarized voltages. We probed the allosteric mechanism of different cyclic nucleotides on the CNBD and on channel gating. Electrophysiology experiments showed that cAMP, cGMP, and cCMP were effective agonists of the channel and produced similar increases in the extent of channel activation. In contrast, electron paramagnetic resonance (EPR) and nuclear magnetic resonance (NMR) on the isolated CNBD indicated that the induced conformational changes and the degrees of stabilization of the active conformation differed for the three cyclic nucleotides. We explain these results with a model where different allosteric mechanisms in the CNBD all converge to have the same effect on the C-linker and render all three cyclic nucleotides similarly potent activators of the channel.

Indexed as

Allosteric RegulationAmino AcidsAnimalsAnisotropyElectronsFluorescenceHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsIon Channel GatingMagnetic Resonance SpectroscopyMiceModels, MolecularNucleotides, CyclicPotassium ChannelsProtein Structure, TertiaryThermodynamicsAmino AcidsHcn2 protein, mouseHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsNucleotides, CyclicPotassium Channelsallosteric regulationcyclic nucleotidedouble electron-electron resonance (DEER)electron paramagnetic resonance (EPR)electrophysiologyfluorescence anisotropyion channelnuclear magnetic resonance (NMR)

Identifiers

PMID26559974
PMCPMC4697172
OpenAlexW2210194516

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.