Evidence map›Paper›PMID 26557128›Full record

ArticleFrontiers in plant science2015

A phylogenetic approach to study the origin and evolution of the CRINKLY4 family.

Natalia Nikonorova, Lam D Vu, Nathan Czyzewicz, Kris Gevaert, Ive De Smet

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Plant peptides - taking them to the next level.Journal of experimental botany · 2016
    Article
  9. Article
  10. PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Natalia NikonorovaDepartment of Plant Systems Biology, Flanders Institute for Biotechnology (VIB) Ghent, Belgium ; Department of Plant Biotechnology and Bioinformatics, Ghent University Ghent, Belgium.
Lam D VuDepartment of Plant Systems Biology, Flanders Institute for Biotechnology (VIB) Ghent, Belgium ; Department of Plant Biotechnology and Bioinformatics, Ghent University Ghent, Belgium ; Department of Medical Protein Research, Flanders Institute for Biotechnology (VIB), Ghent University Ghent, Belgium ; Department of Biochemistry, Ghent University Ghent, Belgium.
Nathan CzyzewiczDivision of Plant and Crop Sciences, School of Biosciences, University of Nottingham Loughborough, UK.
Kris GevaertDepartment of Medical Protein Research, Flanders Institute for Biotechnology (VIB), Ghent University Ghent, Belgium ; Department of Biochemistry, Ghent University Ghent, Belgium.
Ive De SmetDepartment of Plant Systems Biology, Flanders Institute for Biotechnology (VIB) Ghent, Belgium ; Department of Plant Biotechnology and Bioinformatics, Ghent University Ghent, Belgium ; Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham Loughborough, UK ; Center for Plant Integrative Biology, University of Nottingham Loughborough, UK.
Ghent University · BEUniversity of Nottingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/H022457/1
6 · The paper itself

Abstract

Cell-cell communication plays a crucial role in plant growth and development and relies to a large extent on peptide ligand-receptor kinase signaling mechanisms. The CRINKLY4 (CR4) family of receptor-like kinases is involved in a wide range of developmental processes in plants, including mediating columella stem cell identity and differentiation in the Arabidopsis thaliana root tip. Members of the CR4 family contain a signal peptide, an extracellular part, a single-pass transmembrane helix and an intracellular cytoplasmic protein kinase domain. The main distinguishing features of the family are the presence of seven "crinkly" repeats and a TUMOR NECROSIS FACTOR RECEPTOR (TNFR)-like domain in the extracellular part. Here, we investigated the evolutionary origin of the CR4 family and explored to what extent members of this family are conserved throughout the green lineage. We identified members of the CR4 family in various dicots and monocots, and also in the lycophyte Selaginella moellendorffii and the bryophyte Physcomitrella patens. In addition, we attempted to gain insight in the evolutionary origin of different CR4-specific domains, and we could detect "crinkly" repeat containing proteins already in single celled algae. Finally, we related the presence of likely functional CR4 orthologs to its best described signaling module comprising CLAVATA3/EMBRYO SURROUNDING REGION-RELATED 40 (CLE40), WUSCHEL RELATED HOMEOBOX 5 (WOX5), CLAVATA 1 (CLV1), and ARABIDOPSIS CR4 (ACR4), and established that this module likely is already present in bryophytes and lycophytes.

Indexed as

CLE40CLV1CR4crinkly repeatevolutionphylogeneticsstem cellsWOX5

Identifiers

PMID26557128
PMCPMC4617170
OpenAlexW1885818166

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.