Evidence map›Paper›PMID 26556872›Full record

ArticleOncotarget2015

Radiation and SN38 treatments modulate the expression of microRNAs, cytokines and chemokines in colon cancer cells in a p53-directed manner.

Surajit Pathak, Wen-Jian Meng, Suman Kumar Nandy, Jie Ping, Atil Bisgin, Linda Helmfors, Patrik Waldmann, Xiao-Feng Sun

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 53 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 3 countries.

Surajit PathakDepartment of Oncology and Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Wen-Jian MengDepartment of Oncology and Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Suman Kumar NandyDepartment of Biochemistry & Biophysics, University of Kalyani, Kalyani, West Bengal, India.
Jie PingDepartment of Oncology and Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Atil BisginDepartment of Oncology and Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Linda HelmforsDepartment of Molecular Biotechnology/IFM, Linköping University, Linköping, Sweden.
Patrik WaldmannDepartment of Computer and Information Science, Linköping University, Linköping, Sweden.
Xiao-Feng SunDepartment of Oncology and Department of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Linköping University · SEUniversity of Kalyani · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aberrant expression of miRNAs, cytokines and chemokines are involved in pathogenesis of colon cancer. However, the expression of p53 mediated miRNAs, cyto- and chemokines after radiation and SN38 treatment in colon cancer remains elusive. Here, human colon cancer cells, HCT116 with wild-type, heterozygous and a functionally null p53, were treated by radiation and SN38. The expression of 384 miRNAs was determined by using the TaqMan® miRNA array, and the expression of cyto- and chemokines was analyzed by Meso-Scale-Discovery instrument. Up- or down-regulations of miRNAs after radiation and SN38 treatments were largely dependent on p53 status of the cells. Cytokines, IL-6, TNF-α, IL-1β, Il-4, IL-10, VEGF, and chemokines, IL-8, MIP-1α were increased, and IFN-γ expression was decreased after radiation, whereas, IL-6, IFN-γ, TNF-α, IL-1β, Il-4, IL-10, IL-8 were decreased, and VEGF and MIP-1α were increased after SN38 treatment. Bioinformatic analysis pointed out that the highly up-regulated miRNAs, let-7f-5p, miR-455-3p, miR-98, miR-155-5p and the down-regulated miRNAs, miR-1, miR-127-5p, miR-142-5p, miR-202-5p were associated with colon cancer pathways and correlated with cyto- or chemokine expression. These miRNAs have the potential for use in colon cancer therapy as they are related to p53, pro- or anti-inflammatory cyto- or chemokines after the radiation and SN38 treatment.

Indexed as

ChemoradiotherapyAntineoplastic Agents, PhytogenicCamptothecinChemokinesColonic NeoplasmsComputational BiologyCytokinesDatabases, GeneticDose-Response Relationship, DrugGene Expression ProfilingGene Expression Regulation, NeoplasticHCT116 CellsHeterozygoteHumansInhibitory Concentration 50IrinotecanAntineoplastic Agents, PhytogenicCamptothecinChemokinesCytokinesIrinotecanMicroRNAsTP53 protein, humanTumor Suppressor Protein p53chemokinescolon cancer cellscytokinesmiRNAsp53

Identifiers

PMID26556872
PMCPMC4792590
OpenAlexW2172153097

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.