Evidence map›Paper›PMID 26556783›Full record

ArticlePloS one2015

Characterization of Transcriptional Repressor Gene MSX1 Variations for Possible Associations with Congenital Heart Diseases.

Fei-Feng Li, Ying Han, Shuai Shi, Xia Li, Xi-Dong Zhu, Jing Zhou, Qing-Liang Shao, Xue-Qi Li, Shu-Lin Liu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
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  8. Rs2459976 inOncotarget · 2018
    Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 2 countries.

Fei-Feng LiGenomics Research Center (one of the State-Province Key Laboratory of Biopharmaceutical Engineering, China), Harbin Medical University, Harbin, China.
Ying HanDepartment of Cardiology, the Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Shuai ShiDepartment of Cardiology, the Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Xia LiGenomics Research Center (one of the State-Province Key Laboratory of Biopharmaceutical Engineering, China), Harbin Medical University, Harbin, China.
Xi-Dong ZhuDepartment of Neurology, the Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Jing ZhouIntensive care unit, the Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Qing-Liang ShaoDepartment of Neonatalogy, the Second Affiliated Hospital of Harbin Medical University, Harbin, China.
Xue-Qi LiDepartment of Cardiology, the Fourth Affiliated Hospital of Harbin Medical University, Harbin, China.
Shu-Lin LiuGenomics Research Center (one of the State-Province Key Laboratory of Biopharmaceutical Engineering, China), Harbin Medical University, Harbin, China.
Harbin Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe human heart consists of several cell types with distinct lineage origins. Interactions between these cardiac progenitors are very important for heart formation. The muscle segment homeobox gene family plays a key role in the cell morphogenesis and growth, controlled cellular proliferation, differentiation, and apoptosis, but the relationships between the genetic abnormalities and CHD phenotypes still remain largely unknown. The aim of this work was to evaluate variations in MSX1 and MSX2 for their possible associations with CHD.

methodsWe sequenced the MSX1 and MSX2 genes for 300 Chinese Han CHD patients and 400 normal controls and identified the variations. The statistical analyses were conducted using Chi-Square Tests as implemented in SPSS (version 19.0). The Hardy-Weinberg equilibrium test of the population was carried out using the online software OEGE.

resultsSix variations rs4647952, rs2048152, rs4242182, rs61739543, rs111542301 and rs3087539 were identified in the MSX2 gene, but the genetic heterozygosity of those SNPs was very low. In contrast, the genetic heterozygosity of two variations rs3821949 near the 5'UTR and rs12532 within 3'UTR of the MSX1 gene was considerably high. Statistical analyses showed that rs3821949 and rs12532 were associated with the risk of CHD (specifically VSD).

conclusionsThe SNPs rs3821949 and rs12532 in the MSX1 gene were associated with CHD in Chinese Han populations.

Indexed as

Polymorphism, Single NucleotideAdolescentAdultCell DifferentiationChildChild, PreschoolFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHeart Defects, CongenitalHomeodomain ProteinsHumansInfantMaleMiddle AgedMSX1 Transcription FactorHomeodomain ProteinsMSX1 protein, humanMSX1 Transcription FactorMSX2 protein

Identifiers

PMID26556783
PMCPMC4640503
OpenAlexW2261868982

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.