Evidence map›Paper›PMID 26556242›Full record

ArticlePloS one2015

Integrative Genomics Implicates EGFR as a Downstream Mediator in NKX2-1 Amplified Non-Small Cell Lung Cancer.

Nicole Clarke, Jewison Biscocho, Kevin A Kwei, Jean M Davidson, Sushmita Sridhar, Xue Gong, Jonathan R Pollack

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Nicole ClarkeDepartment of Pathology, Stanford University School of Medicine, Stanford, California, United States of America.
Jewison BiscochoDepartment of Pathology, Stanford University School of Medicine, Stanford, California, United States of America.
Kevin A KweiDepartment of Pathology, Stanford University School of Medicine, Stanford, California, United States of America.
Jean M DavidsonDepartment of Pathology, Stanford University School of Medicine, Stanford, California, United States of America.
Sushmita SridharDepartment of Pathology, Stanford University School of Medicine, Stanford, California, United States of America.
Xue GongDepartment of Pathology, Stanford University School of Medicine, Stanford, California, United States of America.
Jonathan R PollackDepartment of Pathology, Stanford University School of Medicine, Stanford, California, United States of America.
Stanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NKX2-1, encoding a homeobox transcription factor, is amplified in approximately 15% of non-small cell lung cancers (NSCLC), where it is thought to drive cancer cell proliferation and survival. However, its mechanism of action remains largely unknown. To identify relevant downstream transcriptional targets, here we carried out a combined NKX2-1 transcriptome (NKX2-1 knockdown followed by RNAseq) and cistrome (NKX2-1 binding sites by ChIPseq) analysis in four NKX2-1-amplified human NSCLC cell lines. While NKX2-1 regulated genes differed among the four cell lines assayed, cell proliferation emerged as a common theme. Moreover, in 3 of the 4 cell lines, epidermal growth factor receptor (EGFR) was among the top NKX2-1 upregulated targets, which we confirmed at the protein level by western blot. Interestingly, EGFR knockdown led to upregulation of NKX2-1, suggesting a negative feedback loop. Consistent with this finding, combined knockdown of NKX2-1 and EGFR in NCI-H1819 lung cancer cells reduced cell proliferation (as well as MAP-kinase and PI3-kinase signaling) more than knockdown of either alone. Likewise, NKX2-1 knockdown enhanced the growth-inhibitory effect of the EGFR-inhibitor erlotinib. Taken together, our findings implicate EGFR as a downstream effector of NKX2-1 in NKX2-1 amplified NSCLC, with possible clinical implications, and provide a rich dataset for investigating additional mediators of NKX2-1 driven oncogenesis.

Indexed as

Gene Expression Regulation, NeoplasticAntineoplastic AgentsCarcinoma, Non-Small-Cell LungCell Line, TumorCell ProliferationErbB ReceptorsErlotinib HydrochlorideHumansLung NeoplasmsNuclear ProteinsProtein Kinase InhibitorsSignal TransductionThyroid Nuclear Factor 1Transcription FactorsUp-RegulationAntineoplastic AgentsEGFR protein, humanErbB ReceptorsErlotinib HydrochlorideNuclear ProteinsProtein Kinase InhibitorsThyroid Nuclear Factor 1Transcription Factors

Identifiers

PMID26556242
PMCPMC4640868
OpenAlexW2232752078

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.