Evidence map›Paper›PMID 26555902›Full record

ArticlePloS one2015

Knockdown of Inner Arm Protein IC138 in Trypanosoma brucei Causes Defective Motility and Flagellar Detachment.

Corinne S Wilson, Alex J Chang, Rebecca Greene, Sulynn Machado, Matthew W Parsons, Taylor A Takats, Luke J Zambetti, Amy L Springer

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. CD8American journal of physiology. Gastrointestinal and liver physiology · 2020
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Corinne S WilsonDepartment of Biology, Siena College, Loudonville, New York, United States of America.
Alex J ChangDepartment of Biology, Amherst College, Amherst, Massachusetts, United States of America.
Rebecca GreeneDepartment of Microbiology, University of Massachusetts, Amherst, Massachusetts, United States of America.
Sulynn MachadoDepartment of Biology, Amherst College, Amherst, Massachusetts, United States of America.
Matthew W ParsonsDepartment of Biology, Amherst College, Amherst, Massachusetts, United States of America.
Taylor A TakatsDepartment of Biology, Siena College, Loudonville, New York, United States of America.
Luke J ZambettiDepartment of Biology, Amherst College, Amherst, Massachusetts, United States of America.
Amy L SpringerDepartment of Biology, Siena College, Loudonville, New York, United States of America.

Funding

Determining function of flagellar regulatory protein IC138 in trypanosomes.R15AI101941 · NIAID · SIENA COLLEGE · PI SPRINGER, AMY L · 2012 to 2012
$389k
NIAID NIH HHS 7R15AI101941-02NIAID NIH HHS R15 AI101941
6 · The paper itself

Abstract

Motility in the protozoan parasite Trypanosoma brucei is conferred by a single flagellum, attached alongside the cell, which moves the cell forward using a beat that is generated from tip-to-base. We are interested in characterizing components that regulate flagellar beating, in this study we extend the characterization of TbIC138, the ortholog of a dynein intermediate chain that regulates axonemal inner arm dynein f/I1. TbIC138 was tagged In situ-and shown to fractionate with the inner arm components of the flagellum. RNAi knockdown of TbIC138 resulted in significantly reduced protein levels, mild growth defect and significant motility defects. These cells tended to cluster, exhibited slow and abnormal motility and some cells had partially or fully detached flagella. Slight but significant increases were observed in the incidence of mis-localized or missing kinetoplasts. To document development of the TbIC138 knockdown phenotype over time, we performed a detailed analysis of flagellar detachment and motility changes over 108 hours following induction of RNAi. Abnormal motility, such as slow twitching or irregular beating, was observed early, and became progressively more severe such that by 72 hours-post-induction, approximately 80% of the cells were immotile. Progressively more cells exhibited flagellar detachment over time, but this phenotype was not as prevalent as immotility, affecting less than 60% of the population. Detached flagella had abnormal beating, but abnormal beating was also observed in cells with no flagellar detachment, suggesting that TbIC138 has a direct, or primary, effect on the flagellar beat, whereas detachment is a secondary phenotype of TbIC138 knockdown. Our results are consistent with the role of TbIC138 as a regulator of motility, and has a phenotype amenable to more extensive structure-function analyses to further elucidate its role in the control of flagellar beat in T. brucei.

Indexed as

AxonemeCell CycleCell NucleusDyneinsFlagellaMitochondriaMovementPhenotypeProtozoan ProteinsRNA InterferenceTrypanosoma brucei bruceiDyneinsProtozoan Proteins

Identifiers

PMID26555902
PMCPMC4640498

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.