Evidence map›Paper›PMID 26555092›Full record

ArticleBMC cancer2015

Somatic loss of function mutations in neurofibromin 1 and MYC associated factor X genes identified by exome-wide sequencing in a wild-type GIST case.

Martin G Belinsky, Lori Rink, Kathy Q Cai, Stephen J Capuzzi, Yen Hoang, Jeremy Chien, Andrew K Godwin, Margaret von Mehren

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Article
  3. Molecular Profiling ofCancers · 2024
    Article
  4. Article
  5. NCCN Guidelines® Insights: Gastrointestinal Stromal Tumors, Version 2.2022.Journal of the National Comprehensive Cancer Network : JNCCN · 2022
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. The Emerging Role of the FGF/FGFR Pathway in Gastrointestinal Stromal Tumor.International journal of molecular sciences · 2020
    Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. What is New in Gastrointestinal Stromal Tumor?Advances in anatomic pathology · 2017
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Martin G BelinskyMolecular Therapeutics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111-2497, USA. martin.belinsky@fccc.edu.
Lori RinkMolecular Therapeutics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111-2497, USA. lori.rink@fccc.edu.
Kathy Q CaiCancer Biology Program, Fox Chase Cancer Center, Philadelphia, PA, USA. qi.cai@fccc.edu.
Stephen J CapuzziMolecular Therapeutics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111-2497, USA. scapuzzi@gmail.com.
Yen HoangDepartment of Bioinformatics and Biosystems Technology, University of Applied Sciences Wildau, Wildau, Germany. yhoang.thw@gmail.com.
Jeremy ChienDepartment of Cancer Biology, University of Kansas Medical Center, Kansas City, KS, USA. jchien@kumc.edu.
Andrew K GodwinDepartment of Pathology and Laboratory Medicine, University of Kansas Medical Center, Kansas City, KS, USA. agodwin@kumc.edu.
Margaret von MehrenMolecular Therapeutics Program, Fox Chase Cancer Center, 333 Cottman Avenue, Philadelphia, PA, 19111-2497, USA. margaret.vonMehren@fccc.edu.
Fox Chase Cancer Center · USUniversity of Kansas Medical Center · USThe University of Kansas Cancer Center · US

Funding

ZNF-Mediated Resistance to Imatinib Mesylate in Gastrointestinal Stromal TumorR00CA158065 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI RINK, LORI · 2014 to 2016
$740k
NCI NIH HHS R00 CA158065
6 · The paper itself

Abstract

backgroundApproximately 10-15 % of gastrointestinal stromal tumors (GISTs) lack gain of function mutations in the KIT and platelet-derived growth factor receptor alpha (PDGFRA) genes. An alternate mechanism of oncogenesis through loss of function of the succinate-dehydrogenase (SDH) enzyme complex has been identified for a subset of these "wild type" GISTs.

methodsPaired tumor and normal DNA from an SDH-intact wild-type GIST case was subjected to whole exome sequencing to identify the pathogenic mechanism(s) in this tumor. Selected findings were further investigated in panels of GIST tumors through Sanger DNA sequencing, quantitative real-time PCR, and immunohistochemical approaches.

resultsA hemizygous frameshift mutation (p.His2261Leufs*4), in the neurofibromin 1 (NF1) gene was identified in the patient's GIST; however, no germline NF1 mutation was found. A somatic frameshift mutation (p.Lys54Argfs*31) in the MYC associated factor X (MAX) gene was also identified. Immunohistochemical analysis for MAX on a large panel of GISTs identified loss of MAX expression in the MAX-mutated GIST and in a subset of mainly KIT-mutated tumors.

conclusionThis study suggests that inactivating NF1 mutations outside the context of neurofibromatosis may be the oncogenic mechanism for a subset of sporadic GIST. In addition, loss of function mutation of the MAX gene was identified for the first time in GIST, and a broader role for MAX in GIST progression was suggested.

Indexed as

AdultAgedAged, 80 and overBasic-Leucine Zipper Transcription FactorsExomeFemaleFrameshift MutationGastrointestinal Stromal TumorsGene Expression Regulation, NeoplasticHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedNeurofibromin 1Proto-Oncogene Proteins c-kitReceptor, Platelet-Derived Growth Factor alphaBasic-Leucine Zipper Transcription FactorsMyc associated factor XNeurofibromin 1Proto-Oncogene Proteins c-kitReceptor, Platelet-Derived Growth Factor alphaSuccinate Dehydrogenase

Identifiers

PMID26555092
PMCPMC4641358
OpenAlexW2180211794

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.