Evidence map›Paper›PMID 26555054›Full record

ArticleDevelopmental cell2015

Global Analysis of mRNA, Translation, and Protein Localization: Local Translation Is a Key Regulator of Cell Protrusions.

Faraz K Mardakheh, Angela Paul, Sandra Kümper, Amine Sadok, Hugh Paterson, Afshan Mccarthy, Yinyin Yuan, Christopher J Marshall

Open access · hybridAbstract read
In one paragraph

Article in Developmental cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 133 citations in OpenAlex.

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  18. The Molecular Impacts of Retrotransposons in Development and Diseases.International journal of molecular sciences · 2023
    Review
  19. Article
  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Faraz K MardakhehDivision of Cancer Biology, Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK. Electronic address: mardakheh@icr.ac.uk.
Angela PaulDivision of Cancer Biology, Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK.
Sandra KümperDivision of Cancer Biology, Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK.
Amine SadokDivision of Cancer Biology, Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK.
Hugh PatersonDivision of Cancer Biology, Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK.
Afshan MccarthyDivision of Cancer Biology, Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK.
Yinyin YuanDivision of Molecular Pathology, Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK.
Christopher J MarshallDivision of Cancer Biology, Institute of Cancer Research, 237 Fulham Road, London SW3 6JB, UK.
Institute of Cancer Research · GB

Funding

Cancer Research UK 16512Cancer Research UK C107/A10433Cancer Research UK C107/A12057Cancer Research UK C107/A16512Wellcome Trust 105104
6 · The paper itself

Abstract

Polarization of cells into a protrusive front and a retracting cell body is the hallmark of mesenchymal-like cell migration. Many mRNAs are localized to protrusions, but it is unclear to what degree mRNA localization contributes toward protrusion formation. We performed global quantitative analysis of the distributions of mRNAs, proteins, and translation rates between protrusions and the cell body by RNA sequencing (RNA-seq) and quantitative proteomics. Our results reveal local translation as a key determinant of protein localization to protrusions. Accordingly, inhibition of local translation destabilizes protrusions and inhibits mesenchymal-like morphology. Interestingly, many mRNAs localized to protrusions are translationally repressed. Specific cis-regulatory elements within mRNA UTRs define whether mRNAs are locally translated or repressed. Finally, RNAi screening of RNA-binding proteins (RBPs) enriched in protrusions revealed trans-regulators of localized translation that are functionally important for protrusions. We propose that by deciphering the localized mRNA UTR code, these proteins regulate protrusion stability and mesenchymal-like morphology.

Indexed as

Cell MovementCell Surface ExtensionsProtein BindingProtein BiosynthesisProtein TransportRNA-Binding ProteinsRNA, MessengerSequence Analysis, RNARNA-Binding ProteinsRNA, Messenger

Identifiers

PMID26555054
PMCPMC4643311
OpenAlexW2147889178

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.