Evidence map›Paper›PMID 26555051›Full record

ArticleDevelopmental cell2015

Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci.

Eirini Kaiserli, Katalin Páldi, Liz O'Donnell, Olga Batalov, Ullas V Pedmale, Dmitri A Nusinow, Steve A Kay, Joanne Chory

Abstract read
In one paragraph

Article in Developmental cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed.

  1. Article
  2. Review
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  9. Article
  10. Review
  11. Article
  12. Article
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  14. Article
  15. Article
  16. Functional dissection of phytochrome A in plants.Frontiers in plant science · 2024
    Review
  17. Isolation of Phytochrome B Photobodies.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Eirini KaiserliHoward Hughes Medical Institute and Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA; Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK. Electronic address: eirini.kaiserli@glasgow.ac.uk.
Katalin PáldiInstitute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK.
Liz O'DonnellInstitute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK.
Olga BatalovHoward Hughes Medical Institute and Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Ullas V PedmaleHoward Hughes Medical Institute and Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Dmitri A NusinowCenter for Chronobiology, University of California, San Diego, La Jolla, CA 92093, USA.
Steve A KayCenter for Chronobiology, University of California, San Diego, La Jolla, CA 92093, USA.
Joanne ChoryHoward Hughes Medical Institute and Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA. Electronic address: chory@salk.edu.

Funding

ENZYMOLOGY OF MISMATCH REPAIR IN YEASTR01GM050006 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Richard D Kolodner · 1994 to 2026
$10.5M
GENETIC ANALYSIS OF CIRCADIAN RHYTHMS IN ARABIDOPSISR01GM056006 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAY, STEVE A, PRUNEDA-PAZ, JOSE L · 1996 to 2016
$6.0M
INITIAL EVENTS IN PHOTORECEPTOR SIGNALINGR01GM052413 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI CHORY, JOANNE · 1995 to 2016
$5.4M
Molecular Mechanisms in the Arabidopsis Circadian ClockR01GM067837 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAY, STEVE A · 2003 to 2015
$4.7M
Molecular Mechanisms in the Arabidopsis Circadian ClockR37GM067837 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI STEVE A KAY · 2017 to 2026
$4.4M
Dissection of EARLY FLOWERING3 Function in the Arabidopsis Circadian ClockF32GM083585 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NUSINOW, DMITRI ANTON · 2008 to 2010
$149k
Howard Hughes Medical InstituteNIGMS NIH HHS F32 GM083585NIGMS NIH HHS GM067837NIGMS NIH HHS GM083585NIGMS NIH HHS R01 GM050006NIGMS NIH HHS R01 GM052413NIGMS NIH HHS R01 GM056006NIGMS NIH HHS R01 GM067837NIGMS NIH HHS R01-GM52413NIGMS NIH HHS R37 GM067837
6 · The paper itself

Abstract

Light regulates major plant developmental transitions by orchestrating a series of nuclear events. This study uncovers the molecular function of the natural variant, TZP (Tandem Zinc-finger-Plus3), as a signal integrator of light and photoperiodic pathways in transcriptional nuclear foci. We report that TZP acts as a positive regulator of photoperiodic flowering via physical interactions with the red-light receptor phytochrome B (phyB). We demonstrate that TZP localizes in dynamic nuclear domains regulated by light quality and photoperiod. This study shows that phyB is indispensable not only for localizing TZP to transcriptionally active nuclear photobodies, but also for recruiting TZP on the promoter of the floral inducer FLOWERING LOCUS T (FT). Our findings signify a unique transcriptional regulatory role to the highly enigmatic plant nuclear photobodies, where TZP directly activates FT gene expression and promotes flowering.

Indexed as

LightArabidopsisArabidopsis ProteinsCell NucleusCircadian RhythmGene Expression Regulation, PlantPhotoperiodSignal TransductionTranscription FactorsTranscription, GeneticArabidopsis ProteinsTranscription Factors

Identifiers

PMID26555051
PMCPMC4654455

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.