Evidence map›Paper›PMID 26554505›Full record

ArticleBioTechniques2015

Into the depths: Techniques for in vitro three-dimensional microtissue visualization.

Pranita K Kabadi, Marguerite M Vantangoli, April L Rodd, Elizabeth Leary, Samantha J Madnick, Jeffrey R Morgan, Agnes Kane, Kim Boekelheide

Abstract read
In one paragraph

Article in BioTechniques, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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  9. Influence ofInternational journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Pranita K KabadiDepartment of Pathology and Laboratory Medicine, Brown University, Providence, RI.
Marguerite M VantangoliDepartment of Pathology and Laboratory Medicine, Brown University, Providence, RI.
April L RoddDepartment of Pathology and Laboratory Medicine, Brown University, Providence, RI.
Elizabeth LearyDepartment of Molecular Pharmacology, Physiology and Biotechnology, Brown University, Providence, RI.
Samantha J MadnickDepartment of Pathology and Laboratory Medicine, Brown University, Providence, RI.
Jeffrey R MorganDepartment of Molecular Pharmacology, Physiology and Biotechnology, Brown University, Providence, RI.
Agnes KaneDepartment of Pathology and Laboratory Medicine, Brown University, Providence, RI.
Kim BoekelheideDepartment of Pathology and Laboratory Medicine, Brown University, Providence, RI.

Funding

Vapor Pressures and Thermodynamic Properties of Complex Organic MixturesP42ES013660 · NIEHS · BROWN UNIVERSITY · PI BOEKELHEIDE, KIM · 2005 to 2020
$37.7M
TRAINING IN ENVIRONMENTAL PATHOLOGYT32ES007272 · NIEHS · BROWN UNIVERSITY · PI ZHITKOVICH, ANATOLY · 1992 to 2021
$7.5M
NIEHS NIH HHS P42 ES013660NIEHS NIH HHS T32 ES007272
6 · The paper itself

Abstract

Three-dimensional (3-D) in vitro platforms have been shown to closely recapitulate human physiology when compared with conventional two-dimensional (2-D) in vitro or in vivo animal model systems. This confers a substantial advantage in evaluating disease mechanisms, pharmaceutical drug discovery, and toxicity testing. Despite the benefits of 3-D cell culture, limitations in visualization and imaging of 3-D microtissues present significant challenges. Here we optimized histology and microscopy techniques to overcome the constraints of 3-D imaging. For morphological assessment of 3-D microtissues of several cell types, different time points, and different sizes, a two-step glycol methacrylate embedding protocol for evaluating 3-D microtissues produced using agarose hydrogels improved resolution of nuclear and cellular histopathology characteristic of cell death and proliferation. Additional immunohistochemistry, immunofluorescence, and in situ immunostaining techniques were successfully adapted to these microtissues and enhanced by optical clearing. Utilizing the Clear(T2) protocol greatly increased fluorescence signal intensity, imaging depth, and clarity, allowing for more complete confocal fluorescence microscopy imaging of these 3-D microtissues compared with uncleared samples. The refined techniques presented here address the key challenges associated with 3-D imaging, providing new and alternative methods in evaluating disease pathogenesis, delineating toxicity pathways, and enhancing the versatility of 3-D in vitro testing systems in pharmacological and toxicological applications.

Indexed as

AnimalsCells, CulturedHumansImaging, Three-DimensionalImmunohistochemistryIn Vitro TechniquesMicroscopyMicroscopy, Confocalclearinghistologymicrotissuesspheroidsthree-dimensional

Identifiers

PMID26554505
PMCPMC4804457

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.