Evidence map›Paper›PMID 26554428›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2016

VERTIcal Grid lOgistic regression (VERTIGO).

Yong Li, Xiaoqian Jiang, Shuang Wang, Hongkai Xiong, Lucila Ohno-Machado

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Being Bayesian in the 2020s: opportunities and challenges in the practice of modern applied Bayesian statistics.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2023
    Article
  5. Federated Learning for Sparse Bayesian Models with Applications to Electronic Health Records and Genomics.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Privacy-Preserving Methods for Vertically Partitioned Incomplete Data.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2020
    Article
  17. Review
  18. Privacy Policy and Technology in Biomedical Data Science.Annual review of biomedical data science · 2018
    Article
  19. Article
  20. Three controversies in health data science.International journal of data science and analytics · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yong LiEE Department, Shanghai Jiaotong University, Shanghai, China, 200240.
Xiaoqian JiangDepartment of Biomedical Informatics, UC San Diego, La Jolla, California, USA x1jiang@ucsd.edu.
Shuang WangDepartment of Biomedical Informatics, UC San Diego, La Jolla, California, USA.
Hongkai XiongEE Department, Shanghai Jiaotong University, Shanghai, China, 200240.
Lucila Ohno-MachadoDepartment of Biomedical Informatics, UC San Diego, La Jolla, California, USA.

Funding

iDASH: Integrating Data for Analysis, Anonymization, and SharingU54HL108460 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OHNO-MACHADO, LUCILA · 2010 to 2015
$19.1M
Privacy preserving technologies for human genome data analysis and disseminationR01HG007078 · NHGRI · TRUSTEES OF INDIANA UNIVERSITY · PI TANG, HAIXU, WANG, XIAOFENG · 2013 to 2015
$886k
Protection of Records: Privacy (PReP) Technology for Medical ResearchR00LM011392 · NLM · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JIANG, XIAOQIAN · 2013 to 2015
$650k
Protect Privacy of Healthcare Data in the CloudR21LM012060 · NLM · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JIANG, XIAOQIAN · 2014 to 2015
$376k
Protecting the pRivacy Of Genomes in Research StudieS (PROGRESS)K99HG008175 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, SHUANG · 2014 to 2015
$100k
NHGRI NIH HHS K99 HG008175NHGRI NIH HHS R01 HG007078NHLBI NIH HHS U54 HL108460NLM NIH HHS R00 LM011392NLM NIH HHS R21 LM012060
6 · The paper itself

Abstract

objectiveTo develop an accurate logistic regression (LR) algorithm to support federated data analysis of vertically partitioned distributed data sets. MATERIAL AND

methodsWe propose a novel technique that solves the binary LR problem by dual optimization to obtain a global solution for vertically partitioned data. We evaluated this new method, VERTIcal Grid lOgistic regression (VERTIGO), in artificial and real-world medical classification problems in terms of the area under the receiver operating characteristic curve, calibration, and computational complexity. We assumed that the institutions could "align" patient records (through patient identifiers or hashed "privacy-protecting" identifiers), and also that they both had access to the values for the dependent variable in the LR model (eg, that if the model predicts death, both institutions would have the same information about death).

resultsThe solution derived by VERTIGO has the same estimated parameters as the solution derived by applying classical LR. The same is true for discrimination and calibration over both simulated and real data sets. In addition, the computational cost of VERTIGO is not prohibitive in practice. DISCUSSION: There is a technical challenge in scaling up federated LR for vertically partitioned data. When the number of patients m is large, our algorithm has to invert a large Hessian matrix. This is an expensive operation of time complexity O(m(3)) that may require large amounts of memory for storage and exchange of information. The algorithm may also not work well when the number of observations in each class is highly imbalanced.

conclusionThe proposed VERTIGO algorithm can generate accurate global models to support federated data analysis of vertically partitioned data.

Indexed as

AlgorithmsLogistic ModelsArea Under CurveData Interpretation, StatisticalROC Curvedual optimizationfederated data analysislogistic regressionvertically partitioned data

Identifiers

PMID26554428
PMCPMC4901373

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.