Evidence map›Paper›PMID 26553976›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Conserved interdomain linker promotes phase separation of the multivalent adaptor protein Nck.

Sudeep Banjade, Qiong Wu, Anuradha Mittal, William B Peeples, Rohit V Pappu, Michael K Rosen

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 197 citations in OpenAlex.

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  16. CytochromeiScience · 2024
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41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Sudeep BanjadeDepartment of Biophysics, UT Southwestern Medical Center, Dallas, TX 75390; Howard Hughes Medical Institute, UT Southwestern Medical Center, Dallas, TX 75390;
Qiong WuDepartment of Biophysics, UT Southwestern Medical Center, Dallas, TX 75390;
Anuradha MittalDepartment of Biomedical Engineering and Center for Biological Systems Engineering, Washington University in St. Louis, St. Louis, MO 63130.
William B PeeplesDepartment of Biophysics, UT Southwestern Medical Center, Dallas, TX 75390; Howard Hughes Medical Institute, UT Southwestern Medical Center, Dallas, TX 75390;
Rohit V PappuDepartment of Biomedical Engineering and Center for Biological Systems Engineering, Washington University in St. Louis, St. Louis, MO 63130.
Michael K RosenDepartment of Biophysics, UT Southwestern Medical Center, Dallas, TX 75390; Howard Hughes Medical Institute, UT Southwestern Medical Center, Dallas, TX 75390; michael.rosen@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USWashington University in St. Louis · USHoward Hughes Medical Institute · USSouthwestern Medical Center · US

Funding

STRUCTURAL STUDY OF RHO-GTPASE REGULATORS AND EFFECTORSR01GM056322 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ROSEN, MICHAEL K · 1997 to 2019
$5.7M
Acquisition of upgrades for 800 MHz NMR consoleS10OD018027 · OD · UT SOUTHWESTERN MEDICAL CENTER · PI RIZOREY, JOSE · 2014 to 2014
$376k
600MHz Varian VNMRS Console UpgradeS10RR026461 · NCRR · UT SOUTHWESTERN MEDICAL CENTER · PI ROSEN, MICHAEL K · 2010 to 2010
$254k
Howard Hughes Medical InstituteNCRR NIH HHS 1S10RR26461-1NCRR NIH HHS S10 RR026461NIGMS NIH HHS R01 GM056322NIGMS NIH HHS R01-GM56322NIH HHS 1S10OD018027-01NIH HHS S10 OD018027
6 · The paper itself

Abstract

The organization of membranes, the cytosol, and the nucleus of eukaryotic cells can be controlled through phase separation of lipids, proteins, and nucleic acids. Collective interactions of multivalent molecules mediated by modular binding domains can induce gelation and phase separation in several cytosolic and membrane-associated systems. The adaptor protein Nck has three SRC-homology 3 (SH3) domains that bind multiple proline-rich segments in the actin regulatory protein neuronal Wiskott-Aldrich syndrome protein (N-WASP) and an SH2 domain that binds to multiple phosphotyrosine sites in the adhesion protein nephrin, leading to phase separation. Here, we show that the 50-residue linker between the first two SH3 domains of Nck enhances phase separation of Nck/N-WASP/nephrin assemblies. Two linear motifs within this element, as well as its overall positively charged character, are important for this effect. The linker increases the driving force for self-assembly of Nck, likely through weak interactions with the second SH3 domain, and this effect appears to promote phase separation. The linker sequence is highly conserved, suggesting that the sequence determinants of the driving forces for phase separation may be generally important to Nck functions. Our studies demonstrate that linker regions between modular domains can contribute to the driving forces for self-assembly and phase separation of multivalent proteins.

Indexed as

Conserved SequenceAdaptor Proteins, Signal TransducingAmino Acid MotifsAmino Acid SequenceMolecular Sequence DataOncogene ProteinsProlineProtein BindingProtein Structure, TertiaryStructure-Activity RelationshipWiskott-Aldrich Syndrome Protein, NeuronalAdaptor Proteins, Signal TransducingNck proteinOncogene ProteinsProlineWiskott-Aldrich Syndrome Protein, Neuronaladaptor proteinsinterdomain linkerintrinsically disorderedmultivalencyphase separation

Identifiers

PMID26553976
PMCPMC4664304
OpenAlexW2125272201

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.