Evidence map›Paper›PMID 26553876›Full record

ArticleThe Journal of biological chemistry2016

Unexpected Allosteric Network Contributes to LRH-1 Co-regulator Selectivity.

Paul M Musille, Bradley R Kossmann, Jeffrey A Kohn, Ivaylo Ivanov, Eric A Ortlund

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

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  14. The nuclear receptor superfamily: A structural perspective.Protein science : a publication of the Protein Society · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Paul M MusilleFrom the Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322 and.
Bradley R Kossmannthe Department of Chemistry, Center for Diagnostics and Therapeutics, Georgia State University, Atlanta, Georgia 30302.
Jeffrey A KohnFrom the Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322 and.
Ivaylo Ivanovthe Department of Chemistry, Center for Diagnostics and Therapeutics, Georgia State University, Atlanta, Georgia 30302.
Eric A OrtlundFrom the Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322 and eortlun@emory.edu.
Emory University · USGeorgia State University · US

Funding

Graduate and Postdoctoral Training in ToxicologyT32ES012870 · NIEHS · EMORY UNIVERSITY · PI Carmen Joseph Marsit · 2004 to 2026
$9.1M
Integrative modeling of PCNA assemblies engaged in genome duplication and repairR01GM110387 · NIGMS · GEORGIA STATE UNIVERSITY · PI IVANOV, IVAYLO NIKOLAEV · 2015 to 2019
$1.7M
Targeting LRH-1 - Phospholipid Signaling in Metabolic PathwaysR01DK095750 · NIDDK · EMORY UNIVERSITY · PI ORTLUND, ERIC A · 2012 to 2016
$1.7M
NIDDK NIH HHS R01 DK095750NIDDK NIH HHS R01DK095750NIEHS NIH HHS T32 ES012870NIEHS NIH HHS T32ES012870NIGMS NIH HHS R01 GM110387NIGMS NIH HHS R01GM110387
6 · The paper itself

Abstract

Phospholipids (PLs) are unusual signaling hormones sensed by the nuclear receptor liver receptor homolog-1 (LRH-1), which has evolved a novel allosteric pathway to support appropriate interaction with co-regulators depending on ligand status. LRH-1 plays an important role in controlling lipid and cholesterol homeostasis and is a potential target for the treatment of metabolic and neoplastic diseases. Although the prospect of modulating LRH-1 via small molecules is exciting, the molecular mechanism linking PL structure to transcriptional co-regulator preference is unknown. Previous studies showed that binding to an activating PL ligand, such as dilauroylphosphatidylcholine, favors LRH-1's interaction with transcriptional co-activators to up-regulate gene expression. Both crystallographic and solution-based structural studies showed that dilauroylphosphatidylcholine binding drives unanticipated structural fluctuations outside of the canonical activation surface in an alternate activation function (AF) region, encompassing the β-sheet-H6 region of the protein. However, the mechanism by which dynamics in the alternate AF influences co-regulator selectivity remains elusive. Here, we pair x-ray crystallography with molecular modeling to identify an unexpected allosteric network that traverses the protein ligand binding pocket and links these two elements to dictate selectivity. We show that communication between the alternate AF region and classical AF2 is correlated with the strength of the co-regulator interaction. This work offers the first glimpse into the conformational dynamics that drive this unusual PL-mediated nuclear hormone receptor activation.

Indexed as

Models, Molecular4-Chloro-7-nitrobenzofurazanAllosteric RegulationApoproteinsBinding SitesDatabases, ProteinFluorescent DyesGenes, ReporterHEK293 CellsHumansLigandsMolecular Dynamics SimulationMutationNuclear Receptor Coactivator 2Peptide FragmentsPhosphatidylethanolamines4-Chloro-7-nitrobenzofurazanApoproteinsFluorescent DyesLigandsNCOA2 protein, humanN-NBD-1,2-dilauroylphosphatidylethanolamineNR5A2 protein, humanNuclear Receptor Coactivator 2nuclear receptor subfamily 0, group B, member 2Peptide FragmentsPhosphatidylethanolaminesPhospholipidsReceptors, Cytoplasmic and NuclearRecombinant Proteinsallosteric regulationdiabeteslipidsmolecular dynamicsnuclear receptorphosphatidylcholine

Identifiers

PMID26553876
PMCPMC4714224
OpenAlexW2134218333

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.