ArticleNucleic acids research2016
Gramene 2016: comparative plant genomics and pathway resources.
Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers, 1 of them a synthesis that pooled it.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
67 citing papers in PubMed, 1 synthesis or guideline pooled it, 132 citations in OpenAlex.
- Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data.Journal of experimental botany · 2017Pooled it
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- A robust 1K-core marker set for wild germplasm management and targeted pre-breeding of rice: development and applications.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Foxtail millet research in supporting climate change resilience efforts: Bibliometric analysis and focused literature review.Heliyon · 2025Review
- Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis.Nucleic acids research · 2024Article
- Conserved and variable heat stress responses of the Heat Shock Factor transcription factor family in maize andPlant direct · 2023Article
- POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling.Environmental microbiome · 2023Article
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- Genome assembly and population genomic analysis provide insights into the evolution of modern sweet corn.Nature communications · 2021Article
- Physiological and Multi-Omics Approaches for Explaining Drought Stress Tolerance and Supporting Sustainable Production of Rice.Frontiers in plant science · 2021Review
- Non-homology-based prediction of gene functions in maize (Zea mays ssp. mays).The plant genome · 2020Article
- Current status of genomic resources on wild relatives of rice.Breeding science · 2020Article
- Transit Peptides From Photosynthesis-Related Proteins Mediate Import of a Marker Protein Into Different Plastid Types and Within Different Species.Frontiers in plant science · 2020Article
- Interpretation of differential gene expression results of RNA-seq data: review and integration.Briefings in bioinformatics · 2019Review
- Identification of the First Nuclear Male Sterility Gene (Male-sterile 9) in Sorghum.The plant genome · 2019Article
- Article
- SSRome: an integrated database and pipelines for exploring microsatellites in all organisms.Nucleic acids research · 2019Article
- The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.Frontiers in plant science · 2019Article
- Variations in the Structure and Evolution of RiceEvolutionary bioinformatics online · 2019Article
- Involving community in genes and pathway curation.Database : the journal of biological databases and curation · 2019Article
7 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
32 authors at 6 institutions in 3 countries.
Funding
Abstract
Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration with Ensembl Plants) and pathways (The Plant Reactome and archival BioCyc databases). Since our last NAR update, the database website adopted a new Drupal management platform. The genomes section features 39 fully assembled reference genomes that are integrated using ontology-based annotation and comparative analyses, and accessed through both visual and programmatic interfaces. Additional community data, such as genetic variation, expression and methylation, are also mapped for a subset of genomes. The Plant Reactome pathway portal (http://plantreactome.gramene.org) provides a reference resource for analyzing plant metabolic and regulatory pathways. In addition to ∼ 200 curated rice reference pathways, the portal hosts gene homology-based pathway projections for 33 plant species. Both the genome and pathway browsers interface with the EMBL-EBI's Expression Atlas to enable the projection of baseline and differential expression data from curated expression studies in plants. Gramene's archive website (http://archive.gramene.org) continues to provide previously reported resources on comparative maps, markers and QTL. To further aid our users, we have also introduced a live monthly educational webinar series and a Gramene YouTube channel carrying video tutorials.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.