Evidence map›Paper›PMID 26553526›Full record

ArticleChemMedChem2016

Combined Use of Oligopeptides, Fragment Libraries, and Natural Compounds: A Comprehensive Approach To Sample the Druggability of Vascular Endothelial Growth Factor.

Núria Bayó-Puxan, Ricard Rodríguez-Mias, Michael Goldflam, Martin Kotev, Sonia Ciudad, Christopher J Hipolito, Monica Varese, Hiroaki Suga, Ramón Campos-Olivas, Xavier Barril and 4 more

Open access · hybridAbstract read
In one paragraph

Article in ChemMedChem, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Núria Bayó-PuxanInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Spain.
Ricard Rodríguez-MiasInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Spain.
Michael GoldflamInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Spain.
Martin KotevInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Spain.
Sonia CiudadInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Spain.
Christopher J HipolitoDepartment of Chemistry, Graduate School of Science, The University of Tokyo, Tokyo, 113-8654, Japan.
Monica VareseInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Spain.
Hiroaki SugaDepartment of Chemistry, Graduate School of Science, The University of Tokyo, Tokyo, 113-8654, Japan.
Ramón Campos-OlivasSpanish National Cancer Research, Madrid, 28029, Spain.
Xavier BarrilDepartment of Physical Chemistry, University of Barcelona, Barcelona, 08028, Spain.
Víctor GuallarCatalan Institution for Research and Advanced Studies, Barcelona, 08010, Spain.
Meritxell TeixidóInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Spain.
Jesús GarcíaInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Spain.
Ernest GiraltInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona, 08028, Spain. ernest.giralt@irbbarcelona.org.
Institute for Research in Biomedicine · ESThe University of Tokyo · JPBarcelona Supercomputing Center · ESSpanish National Cancer Research Centre · ESUniversitat de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The modulation of protein-protein interactions (PPIs) is emerging as a highly promising tool to fight diseases. However, whereas an increasing number of compounds are able to disrupt peptide-mediated PPIs efficiently, the inhibition of domain-domain PPIs appears to be much more challenging. Herein, we report our results related to the interaction between vascular endothelial growth factor (VEGF) and its receptor (VEGFR). The VEGF-VEGFR interaction is a typical domain-domain PPI that is highly relevant for the treatment of cancer and some retinopathies. Our final goal was to identify ligands able to bind VEGF at the region used by the growth factor to interact with its receptor. We undertook an extensive study, combining a variety of experimental approaches, including NMR-spectroscopy-based screening of small organic fragments, peptide libraries, and medicinal plant extracts. The key feature of the successful ligands that emerged from this study was their capacity to expose hydrophobic functional groups able to interact with the hydrophobic hot spots at the interacting VEGF surface patch.

Indexed as

Binding SitesBiological ProductsDose-Response Relationship, DrugHumansLigandsModels, MolecularOligopeptidesPeptide FragmentsPeptide LibraryProtein BindingReceptors, Vascular Endothelial Growth FactorStructure-Activity RelationshipVascular Endothelial Growth Factor ABiological ProductsLigandsOligopeptidesPeptide FragmentsPeptide LibraryReceptors, Vascular Endothelial Growth FactorVascular Endothelial Growth Factor AVEGFA protein, humandrug discoveryfragment screeninggrowth factorspeptidesprotein-protein interactions

Identifiers

PMID26553526
PMCPMC5063151
OpenAlexW2157229291

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.