Evidence map›Paper›PMID 26553382›Full record

ArticleScientific reports2015

Occurrence of viable, red-pigmented haloarchaea in the plumage of captive flamingoes.

Kyung June Yim, Joseph Kwon, In-Tae Cha, Kyung-Seo Oh, Hye Seon Song, Hae-Won Lee, Jin-Kyu Rhee, Eun-Ji Song, Jeong Rae Rho, Mi Lyu Seo and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  4. Microbial Bacterioruberin: A Comprehensive Review.Indian journal of microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Kyung June YimBiological Disaster Analysis Group, Korea Basic Science Institute, Daejeon 305-806, Korea.
Joseph KwonBiological Disaster Analysis Group, Korea Basic Science Institute, Daejeon 305-806, Korea.
In-Tae ChaBiological Disaster Analysis Group, Korea Basic Science Institute, Daejeon 305-806, Korea.
Kyung-Seo OhBiological Disaster Analysis Group, Korea Basic Science Institute, Daejeon 305-806, Korea.
Hye Seon SongBiological Disaster Analysis Group, Korea Basic Science Institute, Daejeon 305-806, Korea.
Hae-Won LeeWorld Institute of Kimchi, Gwangju 503-360, Korea.
Jin-Kyu RheeDepartment of Food Science and Engineering, Ewha Womans University, Seoul 120-750, Korea.
Eun-Ji SongResearch Group of Gut Microbiome, Korea Food Research Institute, Sungnam 463-746, Korea.
Jeong Rae RhoSeoul Zoo, Seoul Grand Park, Gwacheon 427-702, Korea.
Mi Lyu SeoSeoul Zoo, Seoul Grand Park, Gwacheon 427-702, Korea.
Jong-Soon ChoiBiological Disaster Analysis Group, Korea Basic Science Institute, Daejeon 305-806, Korea.
Hak-Jong ChoiWorld Institute of Kimchi, Gwangju 503-360, Korea.
Sung-Jae LeeDepartment of Biology and Department of Life and Nanopharmaceutical Sciences, Kyung Hee University, Seoul 130-701, Korea.
Young-Do NamResearch Group of Gut Microbiome, Korea Food Research Institute, Sungnam 463-746, Korea.
Seong Woon RohBiological Disaster Analysis Group, Korea Basic Science Institute, Daejeon 305-806, Korea.
Korea Basic Science Institute · KRKorea Food Research Institute · KRWorld Institute of Kimchi · KREwha Womans University · KRKyung Hee University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flamingoes (Phoenicopterus spp.) whose plumage displays elegant colors, inhabit warm regions close to the ocean throughout the world. The pink or reddish color of their plumage originates from carotenoids ingested from carotenoid-abundant food sources, since flamingoes are unable to synthesize these compounds de novo. In this study, viable red-colored archaeal strains classified as extremely halophilic archaea (i.e., haloarchaea) and belonging to the genera Halococcus and Halogeometricum were isolated from the plumage of flamingoes in captivity. Detailed analysis for haloarchaeal community structure in flamingo feathers based on metagenomic data identified several haloarchaeal genera and unclassified sequences of the class Halobacteria at the genus level. Carotenoid pigment analyses showed that a bacterioruberin precursor carotenoid in haloarchaea was identical to one of the pigments found in flamingo plumage. To the best of our knowledge, this is the first report of viable extremophilic archaea in avian plumage, thus contributing to our understanding of the ecology of haloarchaea. The potential influence of haloarchaea as an environmental factor determining avian plumage coloration should be investigated in further studies.

Indexed as

PigmentationPigments, BiologicalAnimalsArchaeaBirdsCarotenoidsChromatography, High Pressure LiquidFeathersMetagenomeMetagenomicsMicrobiotaPhylogenyRNA, Ribosomal, 16SCarotenoidsPigments, BiologicalRNA, Ribosomal, 16S

Identifiers

PMID26553382
PMCPMC4639753
OpenAlexW2413160357

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.