Evidence map›Paper›PMID 26553298›Full record

ArticleScientific reports2015

A comprehensive analysis of the chorion locus in silkmoth.

Zhiwei Chen, Junko Nohata, Huizhen Guo, Shenglong Li, Jianqiu Liu, Youbing Guo, Kimiko Yamamoto, Keiko Kadono-Okuda, Chun Liu, Kallare P Arunkumar and 11 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 27 citations in OpenAlex.

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  8. Expression Analysis of mRNA Decay of Maternal Genes duringInternational journal of molecular sciences · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 4 countries.

Zhiwei ChenState Key Laboratory of Silkworm Genome Biology, Chongqing 400716, China.
Junko NohataKirin Brewery Co. Ltd, Toride, Japan.
Huizhen GuoState Key Laboratory of Silkworm Genome Biology, Chongqing 400716, China.
Shenglong LiState Key Laboratory of Silkworm Genome Biology, Chongqing 400716, China.
Jianqiu LiuState Key Laboratory of Silkworm Genome Biology, Chongqing 400716, China.
Youbing GuoState Key Laboratory of Silkworm Genome Biology, Chongqing 400716, China.
Kimiko YamamotoNational Institute of Agrobiological Sciences, Tsukuba 305-8634, Japan.
Keiko Kadono-OkudaNational Institute of Agrobiological Sciences, Tsukuba 305-8634, Japan.
Chun LiuState Key Laboratory of Silkworm Genome Biology, Chongqing 400716, China.
Kallare P ArunkumarCentre for DNA Fingerprinting and Diagnostics, Hyderabad 500001, India.
Javaregowda NagarajuCentre for DNA Fingerprinting and Diagnostics, Hyderabad 500001, India.
Yan ZhangState Key Laboratory of Silkworm Genome Biology, Chongqing 400716, China.
Shiping LiuState Key Laboratory of Silkworm Genome Biology, Chongqing 400716, China.
Vassiliki LabropoulouInsect Molecular Genetics and Biotechnology, Institute of Biosciences &Applications, National Centre for Scientific Research "Demokritos", Athens 15310, Greece.
Luc SweversInsect Molecular Genetics and Biotechnology, Institute of Biosciences &Applications, National Centre for Scientific Research "Demokritos", Athens 15310, Greece.
Panagiota TsitouraInsect Molecular Genetics and Biotechnology, Institute of Biosciences &Applications, National Centre for Scientific Research "Demokritos", Athens 15310, Greece.
Kostas IatrouInsect Molecular Genetics and Biotechnology, Institute of Biosciences &Applications, National Centre for Scientific Research "Demokritos", Athens 15310, Greece.
Karumathil P GopinathanIndian Institute of Science, Bangalore, India.
Marian R GoldsmithUniversity of Rhode Island, Kingston 02881, USA.
Qingyou XiaState Key Laboratory of Silkworm Genome Biology, Chongqing 400716, China.
Kazuei MitaState Key Laboratory of Silkworm Genome Biology, Chongqing 400716, China.
State Key Laboratory of Silkworm Genomic BiologyNational Centre of Scientific Research "Demokritos" · GRCentre for DNA Fingerprinting and Diagnostics · INInstitute of Agrobiological Sciences · JPIndian Institute of Science Bangalore · INKirin (Japan) · JPUniversity of Rhode Island · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite more than 40 years of intense study, essential features of the silkmoth chorion (eggshell) are still not fully understood. To determine the precise structure of the chorion locus, we performed extensive EST analysis, constructed a bacterial artificial chromosome (BAC) contig, and obtained a continuous genomic sequence of 871,711 base pairs. We annotated 127 chorion genes in two segments interrupted by a 164 kb region with 5 non-chorion genes, orthologs of which were on chorion bearing scaffolds in 4 ditrysian families. Detailed transcriptome analysis revealed expression throughout choriogenesis of most chorion genes originally categorized as "middle", and evidence for diverse regulatory mechanisms including cis-elements, alternative splicing and promoter utilization, and antisense RNA. Phylogenetic analysis revealed multigene family associations and faster evolution of early chorion genes and transcriptionally active pseudogenes. Proteomics analysis identified 99 chorion proteins in the eggshell and micropyle localization of 1 early and 6 Hc chorion proteins.

Indexed as

ChorionQuantitative Trait LociAnimalsBombyxComputational BiologyEgg ProteinsEgg ShellExpressed Sequence TagsGene Expression RegulationGene LibraryGene OrderHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationPhylogenyPromoter Regions, GeneticProteomechorion proteinsEgg ProteinsProteome

Identifiers

PMID26553298
PMCPMC4639761
OpenAlexW2176722468

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.